Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004622A_C01 KMC004622A_c01
(565 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_196118.1| putative protein; protein id: At5g04990.1, supp... 100 2e-20
gb|AAF19576.1|AC011708_19 hypothetical protein [Arabidopsis thal... 99 4e-20
ref|NP_566380.1| expressed protein; protein id: At3g10730.1, sup... 99 4e-20
gb|AAM65947.1| unknown [Arabidopsis thaliana] 97 1e-19
sp|O94901|U84A_HUMAN Sad1/unc-84 protein-like 1 48 1e-04
>ref|NP_196118.1| putative protein; protein id: At5g04990.1, supported by cDNA:
gi_15912310 [Arabidopsis thaliana]
gi|10178038|dbj|BAB11521.1| contains similarity to
unknown protein~gb|AAF19576.1~gene_id:MUG13.15
[Arabidopsis thaliana] gi|15912311|gb|AAL08289.1|
AT5g04990/MUG13_15 [Arabidopsis thaliana]
gi|21360559|gb|AAM47476.1| AT5g04990/MUG13_15
[Arabidopsis thaliana]
Length = 471
Score = 99.8 bits (247), Expect = 2e-20
Identities = 44/65 (67%), Positives = 56/65 (85%)
Frame = -1
Query: 562 MFLLTEFSYDLEKSNAQTFNVLNSAGSGVINTIRLDFTSNHGNPSHTCIYRLRVHGHEPE 383
M LLTEF+YDL++SNAQTFN+L S+ SG+I+T+RLDFTSNHG+ SHTCIYR RVHG P+
Sbjct: 394 MQLLTEFTYDLDRSNAQTFNILESSSSGLIDTVRLDFTSNHGSDSHTCIYRFRVHGRAPD 453
Query: 382 SVSMM 368
V ++
Sbjct: 454 PVPVV 458
>gb|AAF19576.1|AC011708_19 hypothetical protein [Arabidopsis thaliana]
gi|26451214|dbj|BAC42710.1| unknown protein [Arabidopsis
thaliana]
Length = 455
Score = 99.0 bits (245), Expect = 4e-20
Identities = 45/64 (70%), Positives = 56/64 (87%)
Frame = -1
Query: 562 MFLLTEFSYDLEKSNAQTFNVLNSAGSGVINTIRLDFTSNHGNPSHTCIYRLRVHGHEPE 383
M LLTEFSYDL++SNAQTF++ +SA SG++NT+RLDF SNHG+ SHTCIYR RVHG E +
Sbjct: 389 MPLLTEFSYDLDRSNAQTFDIADSAHSGLVNTVRLDFNSNHGSSSHTCIYRFRVHGRELD 448
Query: 382 SVSM 371
SVS+
Sbjct: 449 SVSV 452
>ref|NP_566380.1| expressed protein; protein id: At3g10730.1, supported by cDNA:
6516. [Arabidopsis thaliana]
Length = 307
Score = 99.0 bits (245), Expect = 4e-20
Identities = 45/64 (70%), Positives = 56/64 (87%)
Frame = -1
Query: 562 MFLLTEFSYDLEKSNAQTFNVLNSAGSGVINTIRLDFTSNHGNPSHTCIYRLRVHGHEPE 383
M LLTEFSYDL++SNAQTF++ +SA SG++NT+RLDF SNHG+ SHTCIYR RVHG E +
Sbjct: 241 MPLLTEFSYDLDRSNAQTFDIADSAHSGLVNTVRLDFNSNHGSSSHTCIYRFRVHGRELD 300
Query: 382 SVSM 371
SVS+
Sbjct: 301 SVSV 304
>gb|AAM65947.1| unknown [Arabidopsis thaliana]
Length = 285
Score = 97.1 bits (240), Expect = 1e-19
Identities = 44/64 (68%), Positives = 56/64 (86%)
Frame = -1
Query: 562 MFLLTEFSYDLEKSNAQTFNVLNSAGSGVINTIRLDFTSNHGNPSHTCIYRLRVHGHEPE 383
M LLTEFSY+L++SNAQTF++ +SA SG++NT+RLDF SNHG+ SHTCIYR RVHG E +
Sbjct: 219 MPLLTEFSYNLDRSNAQTFDIADSAHSGLVNTVRLDFNSNHGSSSHTCIYRFRVHGRELD 278
Query: 382 SVSM 371
SVS+
Sbjct: 279 SVSV 282
>sp|O94901|U84A_HUMAN Sad1/unc-84 protein-like 1
Length = 812
Score = 47.8 bits (112), Expect = 1e-04
Identities = 21/54 (38%), Positives = 29/54 (52%)
Frame = -1
Query: 556 LLTEFSYDLEKSNAQTFNVLNSAGSGVINTIRLDFTSNHGNPSHTCIYRLRVHG 395
LL +F+YD + + Q F L + L SN G+P +TC+YR RVHG
Sbjct: 755 LLGQFTYDQDGESLQMFQALKRPDDTAFQIVELRIFSNWGHPEYTCLYRFRVHG 808
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 432,853,842
Number of Sequences: 1393205
Number of extensions: 8460859
Number of successful extensions: 17713
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 17259
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17710
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20382500157
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
