Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004621A_C01 KMC004621A_c01
(568 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_704325.1| hypothetical protein [Plasmodium falciparum 3D7... 51 1e-05
ref|XP_207842.1| hypothetical protein XP_207842 [Mus musculus] 50 1e-05
ref|XP_207843.1| hypothetical protein XP_207843 [Mus musculus] 48 1e-04
ref|XP_207798.1| similar to ORF 1~putative [Rattus norvegicus] [... 48 1e-04
ref|XP_111752.2| similar to PROBABLE POL POLYPROTEIN [Mus musculus] 47 2e-04
>ref|NP_704325.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23499064|emb|CAD51144.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 1176
Score = 50.8 bits (120), Expect = 1e-05
Identities = 24/51 (47%), Positives = 30/51 (58%)
Frame = -3
Query: 563 NGEIENDEDSETEIQTEDTEENVQKKKKKNTKGEKQNKKRLGKKKSDKSNT 411
NG +DE+ + E+ E N QKKKKK KG K+NK + K SDKS T
Sbjct: 173 NGSGSDDEEKKNNNYNEENENNTQKKKKKKKKGNKKNKNKNKNKNSDKSET 223
>ref|XP_207842.1| hypothetical protein XP_207842 [Mus musculus]
Length = 235
Score = 50.4 bits (119), Expect = 1e-05
Identities = 24/62 (38%), Positives = 36/62 (57%)
Frame = -3
Query: 551 ENDEDSETEIQTEDTEENVQKKKKKNTKGEKQNKKRLGKKKSDKSNTRKMRSTKRQAKKS 372
E +E+ E E + E+ EE ++KKKK K +K+ KK+ KKK K R+ R K + +K
Sbjct: 156 EEEEEEEEEEEEEEEEEEEEEKKKKKKKKKKKKKKKKKKKKKKKKKRRRRRKKKSRGEKE 215
Query: 371 RK 366
K
Sbjct: 216 EK 217
Score = 49.7 bits (117), Expect = 3e-05
Identities = 25/63 (39%), Positives = 37/63 (58%)
Frame = -3
Query: 557 EIENDEDSETEIQTEDTEENVQKKKKKNTKGEKQNKKRLGKKKSDKSNTRKMRSTKRQAK 378
E E +E+ E E + E+ EE +KKKKK K +K+ KK+ KKK + RK +S + +
Sbjct: 157 EEEEEEEEEEEEEEEEEEEEKKKKKKKKKKKKKKKKKKKKKKKKKRRRRRKKKSRGEKEE 216
Query: 377 KSR 369
K R
Sbjct: 217 KGR 219
Score = 49.3 bits (116), Expect = 3e-05
Identities = 24/63 (38%), Positives = 36/63 (57%)
Frame = -3
Query: 557 EIENDEDSETEIQTEDTEENVQKKKKKNTKGEKQNKKRLGKKKSDKSNTRKMRSTKRQAK 378
E E +E+ E E + E+ EE +KKKKK K +K+ KK+ KKK K R+ + R K
Sbjct: 155 EEEEEEEEEEEEEEEEEEEEEEKKKKKKKKKKKKKKKKKKKKKKKKKRRRRRKKKSRGEK 214
Query: 377 KSR 369
+ +
Sbjct: 215 EEK 217
Score = 34.3 bits (77), Expect = 1.1
Identities = 19/48 (39%), Positives = 28/48 (57%)
Frame = -2
Query: 501 KCAEEEEEEYQRREAE*EEIGKEEK*QIKHKENAVNQKASQEKPKRMR 358
K EEEEEE + E E EE +EEK + K K+ +K ++K K+ +
Sbjct: 153 KKEEEEEEEEEEEEEEEEEEEEEEKKKKKKKKKKKKKKKKKKKKKKKK 200
Score = 33.1 bits (74), Expect = 2.5
Identities = 18/50 (36%), Positives = 29/50 (58%)
Frame = -2
Query: 501 KCAEEEEEEYQRREAE*EEIGKEEK*QIKHKENAVNQKASQEKPKRMRSE 352
K EEEEEE + E E EE +EE+ + K K+ +K ++K K+ + +
Sbjct: 152 KKKEEEEEEEEEEEEEEEEEEEEEEKKKKKKKKKKKKKKKKKKKKKKKKK 201
Score = 32.0 bits (71), Expect = 5.5
Identities = 17/47 (36%), Positives = 28/47 (59%)
Frame = -2
Query: 492 EEEEEEYQRREAE*EEIGKEEK*QIKHKENAVNQKASQEKPKRMRSE 352
EEEEEE + E E E+ K++K + K K+ +K ++K +R R +
Sbjct: 162 EEEEEEEEEEEEEEEKKKKKKKKKKKKKKKKKKKKKKKKKRRRRRKK 208
Score = 31.2 bits (69), Expect = 9.4
Identities = 20/78 (25%), Positives = 36/78 (45%), Gaps = 14/78 (17%)
Frame = -3
Query: 557 EIENDEDSETEIQTEDTEENVQKKKKKN--------------TKGEKQNKKRLGKKKSDK 420
E E +E+ E E + E+ EE +KKKKK K ++ KK+ +K +K
Sbjct: 158 EEEEEEEEEEEEEEEEEEEKKKKKKKKKKKKKKKKKKKKKKKKKRRRRRKKKSRGEKEEK 217
Query: 419 SNTRKMRSTKRQAKKSRK 366
++ + + +K R+
Sbjct: 218 GRILELLNFYLERRKQRE 235
>ref|XP_207843.1| hypothetical protein XP_207843 [Mus musculus]
Length = 236
Score = 47.8 bits (112), Expect = 1e-04
Identities = 27/73 (36%), Positives = 39/73 (52%), Gaps = 8/73 (10%)
Frame = -3
Query: 557 EIENDEDSETEIQTEDTEENVQKKKKKNTKGE--------KQNKKRLGKKKSDKSNTRKM 402
E E +E+ E E + E+ EE +KKKKK K + Q KK+ KKK K ++
Sbjct: 99 EEEEEEEEEEEEEEEEEEEKEEKKKKKKKKKKFSYTLYFTSQKKKKKKKKKKRKRKRKRK 158
Query: 401 RSTKRQAKKSRKE 363
R KR+ KK +K+
Sbjct: 159 RKRKRKKKKKKKK 171
Score = 43.5 bits (101), Expect = 0.002
Identities = 21/63 (33%), Positives = 38/63 (59%)
Frame = -3
Query: 551 ENDEDSETEIQTEDTEENVQKKKKKNTKGEKQNKKRLGKKKSDKSNTRKMRSTKRQAKKS 372
E +E+ E E + E+ EE ++++++ + EK+ KK+ KKK S T S K++ KK
Sbjct: 88 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEKKKKKKKKKKFSYTLYFTSQKKKKKKK 147
Query: 371 RKE 363
+K+
Sbjct: 148 KKK 150
Score = 40.8 bits (94), Expect = 0.012
Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 22/89 (24%)
Frame = -3
Query: 557 EIENDEDSETEIQTEDTEENVQKKKKKN----------------------TKGEKQNKKR 444
E E +E+ E E + E+ EE +KKKKK + K+ +KR
Sbjct: 102 EEEEEEEEEEEEEEEEKEEKKKKKKKKKKFSYTLYFTSQKKKKKKKKKKRKRKRKRKRKR 161
Query: 443 LGKKKSDKSNTRKMRSTKRQAKKSRKE*E 357
KKK K +K + K++ KK +K+ E
Sbjct: 162 KRKKKKKKKKKKKKKKKKKKKKKKKKKRE 190
Score = 37.7 bits (86), Expect = 0.10
Identities = 21/76 (27%), Positives = 39/76 (50%), Gaps = 12/76 (15%)
Frame = -3
Query: 557 EIENDEDSETEIQTEDTEENVQKKKKKNTKGEKQNKKRLGKK------------KSDKSN 414
E E +E+ E E + E+ EE ++++++ + +++ KK+ KK K K
Sbjct: 87 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEKKKKKKKKKKFSYTLYFTSQKKKKKK 146
Query: 413 TRKMRSTKRQAKKSRK 366
+K R KR+ K+ RK
Sbjct: 147 KKKKRKRKRKRKRKRK 162
Score = 34.3 bits (77), Expect = 1.1
Identities = 19/54 (35%), Positives = 30/54 (55%)
Frame = -2
Query: 495 AEEEEEEYQRREAE*EEIGKEEK*QIKHKENAVNQKASQEKPKRMRSEMFVFNN 334
AEEEEEE + E E EE +EE+ + + +E +K ++K K+ S F +
Sbjct: 86 AEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEKKKKKKKKKKFSYTLYFTS 139
>ref|XP_207798.1| similar to ORF 1~putative [Rattus norvegicus] [Mus musculus]
Length = 178
Score = 47.8 bits (112), Expect = 1e-04
Identities = 28/69 (40%), Positives = 38/69 (54%)
Frame = -3
Query: 563 NGEIENDEDSETEIQTEDTEENVQKKKKKNTKGEKQNKKRLGKKKSDKSNTRKMRSTKRQ 384
N E E +E+ E E + + EE +K+KKK +K+ KK+ KKK K RK K +
Sbjct: 85 NEEEEEEEEREEEEEVGEEEEEKEKEKKK----KKKKKKKKKKKKKKKKKRRKEEEEKEK 140
Query: 383 AKKSRKE*E 357
KK RKE E
Sbjct: 141 KKKRRKEEE 149
Score = 44.3 bits (103), Expect = 0.001
Identities = 20/65 (30%), Positives = 39/65 (59%)
Frame = -3
Query: 551 ENDEDSETEIQTEDTEENVQKKKKKNTKGEKQNKKRLGKKKSDKSNTRKMRSTKRQAKKS 372
+N+E+ E E + E+ E ++++K+ K +K+ KK+ KKK K R+ +++ KK
Sbjct: 84 KNEEEEEEEEREEEEEVGEEEEEKEKEKKKKKKKKKKKKKKKKKKKKRRKEEEEKEKKKK 143
Query: 371 RKE*E 357
R++ E
Sbjct: 144 RRKEE 148
Score = 43.5 bits (101), Expect = 0.002
Identities = 19/65 (29%), Positives = 38/65 (58%)
Frame = -3
Query: 557 EIENDEDSETEIQTEDTEENVQKKKKKNTKGEKQNKKRLGKKKSDKSNTRKMRSTKRQAK 378
E E +E+ E + E+ E+ +KKKKK K +K+ KK+ ++K ++ +K + K + +
Sbjct: 91 EEEREEEEEVGEEEEEKEKEKKKKKKKKKKKKKKKKKKKKRRKEEEEKEKKKKRRKEEEE 150
Query: 377 KSRKE 363
+ K+
Sbjct: 151 EEEKK 155
Score = 42.0 bits (97), Expect = 0.005
Identities = 19/64 (29%), Positives = 38/64 (58%)
Frame = -3
Query: 557 EIENDEDSETEIQTEDTEENVQKKKKKNTKGEKQNKKRLGKKKSDKSNTRKMRSTKRQAK 378
E E +E+ E + ++ E+ +KKKKK K +K+ KK+ K++ +K +K R + + +
Sbjct: 93 EREEEEEVGEEEEEKEKEKKKKKKKKKKKKKKKKKKKKRRKEEEEKEKKKKRRKEEEEEE 152
Query: 377 KSRK 366
+ +K
Sbjct: 153 EKKK 156
Score = 38.1 bits (87), Expect = 0.077
Identities = 17/49 (34%), Positives = 30/49 (60%)
Frame = -2
Query: 498 CAEEEEEEYQRREAE*EEIGKEEK*QIKHKENAVNQKASQEKPKRMRSE 352
CA+ EEEE + E EE+G+EE+ + K K+ +K ++K K+ + +
Sbjct: 82 CAKNEEEEEEEEREEEEEVGEEEEEKEKEKKKKKKKKKKKKKKKKKKKK 130
Score = 36.6 bits (83), Expect = 0.22
Identities = 18/69 (26%), Positives = 40/69 (57%), Gaps = 4/69 (5%)
Frame = -3
Query: 560 GEIENDEDSETEIQTEDTEENVQKKKKKN----TKGEKQNKKRLGKKKSDKSNTRKMRST 393
GE E +++ E + + + ++ +KKKKK + EK+ KK+ K++ ++ +K R
Sbjct: 101 GEEEEEKEKEKKKKKKKKKKKKKKKKKKKKRRKEEEEKEKKKKRRKEEEEEEEKKKRRRR 160
Query: 392 KRQAKKSRK 366
+R+ ++ R+
Sbjct: 161 RRRRRRRRR 169
Score = 32.7 bits (73), Expect = 3.2
Identities = 18/47 (38%), Positives = 27/47 (57%)
Frame = -2
Query: 492 EEEEEEYQRREAE*EEIGKEEK*QIKHKENAVNQKASQEKPKRMRSE 352
EEEEEE + E EE ++EK + K K+ +K ++K K+ R E
Sbjct: 88 EEEEEEREEEEEVGEEEEEKEKEKKKKKKKKKKKKKKKKKKKKRRKE 134
>ref|XP_111752.2| similar to PROBABLE POL POLYPROTEIN [Mus musculus]
Length = 990
Score = 47.0 bits (110), Expect = 2e-04
Identities = 23/60 (38%), Positives = 36/60 (59%)
Frame = -3
Query: 551 ENDEDSETEIQTEDTEENVQKKKKKNTKGEKQNKKRLGKKKSDKSNTRKMRSTKRQAKKS 372
+ +E+ E E + E+ EE +KKKKK K +K+ KK+ KKK K + + K++AK S
Sbjct: 29 KQEEEEEEEEEAEEEEEQEKKKKKKKKKKKKKKKKKKKKKKKKKKKKKNGKKGKKRAKIS 88
Score = 47.0 bits (110), Expect = 2e-04
Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 3/93 (3%)
Frame = -3
Query: 551 ENDEDSETEIQTEDTEENVQKKKKKNTKGEKQNKKRLGKKKSDKSNT---RKMRSTKRQA 381
E +E+ E E + E+ +E +KKKKK K +K+ KK+ KKK K K R+ +A
Sbjct: 31 EEEEEEEEEAEEEEEQEKKKKKKKKKKKKKKKKKKKKKKKKKKKKKNGKKGKKRAKISEA 90
Query: 380 KKSRKE*EVRCLFSTICEGVFFFSGYCHLPSYV 282
K + E RC + + F S +PS++
Sbjct: 91 KVAELETRNRCEHAAV-RNSNFLSKLSSIPSFL 122
Score = 44.3 bits (103), Expect = 0.001
Identities = 20/63 (31%), Positives = 38/63 (59%)
Frame = -3
Query: 557 EIENDEDSETEIQTEDTEENVQKKKKKNTKGEKQNKKRLGKKKSDKSNTRKMRSTKRQAK 378
E + ++ E E + E+ EE +++KKK K +K+ KK+ KKK K +K ++ K+ K
Sbjct: 24 EKKQEKQEEEEEEEEEAEEEEEQEKKKKKKKKKKKKKKKKKKKKKKKKKKKKKNGKKGKK 83
Query: 377 KSR 369
+++
Sbjct: 84 RAK 86
Score = 37.4 bits (85), Expect = 0.13
Identities = 18/65 (27%), Positives = 37/65 (56%)
Frame = -3
Query: 533 ETEIQTEDTEENVQKKKKKNTKGEKQNKKRLGKKKSDKSNTRKMRSTKRQAKKSRKE*EV 354
E + + ++ EE +++ ++ + EK+ KK+ KKK K +K + K++ KK+ K+ +
Sbjct: 24 EKKQEKQEEEEEEEEEAEEEEEQEKKKKKKKKKKKKKKKKKKKKKKKKKKKKKNGKKGKK 83
Query: 353 RCLFS 339
R S
Sbjct: 84 RAKIS 88
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 473,838,095
Number of Sequences: 1393205
Number of extensions: 10773073
Number of successful extensions: 89974
Number of sequences better than 10.0: 1342
Number of HSP's better than 10.0 without gapping: 57588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80039
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20669577624
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
