Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004619A_C01 KMC004619A_c01
(532 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_180010.1| unknown protein; protein id: At2g24330.1 [Arabi... 87 2e-16
ref|NP_194838.1| putative protein; protein id: At4g31090.1 [Arab... 85 5e-16
gb|AAM97113.1| unknown protein [Arabidopsis thaliana] 85 5e-16
dbj|BAB71207.1| unnamed protein product [Homo sapiens] 54 1e-06
ref|XP_042834.1| similar to KIAA1715 protein [Homo sapiens] 54 1e-06
>ref|NP_180010.1| unknown protein; protein id: At2g24330.1 [Arabidopsis thaliana]
gi|7388552|sp|Q9ZQ34|YBX0_ARATH Hypothetical 45.9 kDa
protein At2g24330 gi|25412207|pir||D84635 hypothetical
protein At2g24330 [imported] - Arabidopsis thaliana
gi|4337192|gb|AAD18106.1| unknown protein [Arabidopsis
thaliana] gi|26452966|dbj|BAC43559.1| unknown protein
[Arabidopsis thaliana]
Length = 408
Score = 86.7 bits (213), Expect = 2e-16
Identities = 36/42 (85%), Positives = 38/42 (89%)
Frame = -2
Query: 528 SYALICGNCHMHNGLARKEEFPFITYYCPHCHALNKPKQSGE 403
SYALICGNC MHNGLARKE+FP+ITYYCPHC ALNKPK S E
Sbjct: 308 SYALICGNCRMHNGLARKEDFPYITYYCPHCRALNKPKHSEE 349
>ref|NP_194838.1| putative protein; protein id: At4g31090.1 [Arabidopsis thaliana]
gi|7459349|pir||T10663 hypothetical protein F6E21.10 -
Arabidopsis thaliana gi|7270011|emb|CAB79827.1| putative
protein [Arabidopsis thaliana]
Length = 250
Score = 85.1 bits (209), Expect = 5e-16
Identities = 35/44 (79%), Positives = 39/44 (88%)
Frame = -2
Query: 528 SYALICGNCHMHNGLARKEEFPFITYYCPHCHALNKPKQSGEQI 397
SYALICGNC MHNGLARKE+F +ITYYCPHC+ALNKPK S E +
Sbjct: 154 SYALICGNCRMHNGLARKEDFAYITYYCPHCNALNKPKHSEENV 197
>gb|AAM97113.1| unknown protein [Arabidopsis thaliana]
Length = 409
Score = 85.1 bits (209), Expect = 5e-16
Identities = 35/44 (79%), Positives = 39/44 (88%)
Frame = -2
Query: 528 SYALICGNCHMHNGLARKEEFPFITYYCPHCHALNKPKQSGEQI 397
SYALICGNC MHNGLARKE+F +ITYYCPHC+ALNKPK S E +
Sbjct: 313 SYALICGNCRMHNGLARKEDFAYITYYCPHCNALNKPKHSEENV 356
>dbj|BAB71207.1| unnamed protein product [Homo sapiens]
Length = 423
Score = 53.9 bits (128), Expect = 1e-06
Identities = 37/125 (29%), Positives = 53/125 (41%), Gaps = 3/125 (2%)
Frame = -2
Query: 525 YALICGNCHMHNGLARKEEFPFITYYCPHCHALN---KPKQSGEQISGFNSPKANNGEAD 355
YALIC C HNG+A KEEF +I + C +C LN K + ++ F+ K E
Sbjct: 267 YALICQQCFSHNGMALKEEFEYIAFRCAYCFFLNPARKTRPQAPRLPEFSFEKRQVVEGS 326
Query: 354 RNPSACAAAKLMRSNNPVNTSPETKKNL*GLGKQAS*KQVSFGEWPLDMSIPMFEDTDQT 175
+ + ++ S+N N L +Q D IP E T+Q
Sbjct: 327 SSVGPLPSGSVLSSDNQFNEESLEHDVLDDNTEQT------------DDKIPATEQTNQV 374
Query: 174 IRKAT 160
I KA+
Sbjct: 375 IEKAS 379
>ref|XP_042834.1| similar to KIAA1715 protein [Homo sapiens]
Length = 428
Score = 53.9 bits (128), Expect = 1e-06
Identities = 37/125 (29%), Positives = 53/125 (41%), Gaps = 3/125 (2%)
Frame = -2
Query: 525 YALICGNCHMHNGLARKEEFPFITYYCPHCHALN---KPKQSGEQISGFNSPKANNGEAD 355
YALIC C HNG+A KEEF +I + C +C LN K + ++ F+ K E
Sbjct: 272 YALICQQCFSHNGMALKEEFEYIAFRCAYCFFLNPARKTRPQAPRLPEFSFEKRQVVEGS 331
Query: 354 RNPSACAAAKLMRSNNPVNTSPETKKNL*GLGKQAS*KQVSFGEWPLDMSIPMFEDTDQT 175
+ + ++ S+N N L +Q D IP E T+Q
Sbjct: 332 SSVGPLPSGSVLSSDNQFNEESLEHDVLDDNTEQT------------DDKIPATEQTNQV 379
Query: 174 IRKAT 160
I KA+
Sbjct: 380 IEKAS 384
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 476,287,062
Number of Sequences: 1393205
Number of extensions: 10606454
Number of successful extensions: 28774
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 28160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28762
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17596710992
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
