Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004618A_C01 KMC004618A_c01
(501 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF63756.1|AF243475_1 pectate lyase [Vitis vinifera] 83 5e-26
ref|NP_567707.1| putative pectate lyase; protein id: At4g24780.1... 85 2e-25
gb|AAK25850.1|AF360140_1 putative pectate lyase [Arabidopsis tha... 85 2e-25
pir||T05556 pectate lyase (EC 4.2.2.2) F22K18.20 - Arabidopsis t... 85 2e-25
gb|AAF19195.1|AF206319_1 pectate lyase 1 [Musa acuminata] 80 2e-24
>gb|AAF63756.1|AF243475_1 pectate lyase [Vitis vinifera]
Length = 398
Score = 82.8 bits (203), Expect(3) = 5e-26
Identities = 37/57 (64%), Positives = 46/57 (79%)
Frame = -1
Query: 501 IGGSANPTLHSQGHSFVAPNDRFSQEVTKH*GCTTRAEWKGWNWRSEGDLLLNGALF 331
IGGSA+PT++SQG+ F+APNDRF + VTKH +EW+ WNWRSEGDL+LNGA F
Sbjct: 300 IGGSADPTINSQGNRFLAPNDRFKKAVTKH-EDAPESEWRHWNWRSEGDLMLNGAFF 355
Score = 52.0 bits (123), Expect(3) = 5e-26
Identities = 24/31 (77%), Positives = 27/31 (86%)
Frame = -3
Query: 292 RASSLSARPSTLVGTITTGAGALNCRKGSHC 200
R SSLSARPS+LVG+IT G+GAL CRKGS C
Sbjct: 368 RRSSLSARPSSLVGSITLGSGALGCRKGSRC 398
Score = 24.3 bits (51), Expect(3) = 5e-26
Identities = 10/15 (66%), Positives = 12/15 (79%)
Frame = -2
Query: 335 FFTATGAGASGSYAQ 291
FF +GAGAS SYA+
Sbjct: 354 FFLQSGAGASSSYAR 368
>ref|NP_567707.1| putative pectate lyase; protein id: At4g24780.1, supported by cDNA:
36681., supported by cDNA: gi_13430455 [Arabidopsis
thaliana]
Length = 408
Score = 85.1 bits (209), Expect(3) = 2e-25
Identities = 40/57 (70%), Positives = 46/57 (80%)
Frame = -1
Query: 501 IGGSANPTLHSQGHSFVAPNDRFSQEVTKH*GCTTRAEWKGWNWRSEGDLLLNGALF 331
IGGSANPT++SQG+ F+APN RFS+EVTKH +EWK WNWRS GDLLLNGA F
Sbjct: 310 IGGSANPTINSQGNRFLAPNIRFSKEVTKH-EDAPESEWKRWNWRSSGDLLLNGAFF 365
Score = 48.5 bits (114), Expect(3) = 2e-25
Identities = 21/31 (67%), Positives = 27/31 (86%)
Frame = -3
Query: 292 RASSLSARPSTLVGTITTGAGALNCRKGSHC 200
+ASSL A+PS+LVG +T+ +GALNCRKGS C
Sbjct: 378 KASSLGAKPSSLVGPLTSTSGALNCRKGSRC 408
Score = 23.1 bits (48), Expect(3) = 2e-25
Identities = 9/16 (56%), Positives = 12/16 (74%)
Frame = -2
Query: 335 FFTATGAGASGSYAQS 288
FFT +G AS SYA++
Sbjct: 364 FFTPSGGAASSSYAKA 379
>gb|AAK25850.1|AF360140_1 putative pectate lyase [Arabidopsis thaliana]
Length = 408
Score = 85.1 bits (209), Expect(3) = 2e-25
Identities = 40/57 (70%), Positives = 46/57 (80%)
Frame = -1
Query: 501 IGGSANPTLHSQGHSFVAPNDRFSQEVTKH*GCTTRAEWKGWNWRSEGDLLLNGALF 331
IGGSANPT++SQG+ F+APN RFS+EVTKH +EWK WNWRS GDLLLNGA F
Sbjct: 310 IGGSANPTINSQGNRFLAPNIRFSKEVTKH-EDAPESEWKRWNWRSSGDLLLNGAFF 365
Score = 48.5 bits (114), Expect(3) = 2e-25
Identities = 21/31 (67%), Positives = 27/31 (86%)
Frame = -3
Query: 292 RASSLSARPSTLVGTITTGAGALNCRKGSHC 200
+ASSL A+PS+LVG +T+ +GALNCRKGS C
Sbjct: 378 KASSLGAKPSSLVGPLTSTSGALNCRKGSRC 408
Score = 23.1 bits (48), Expect(3) = 2e-25
Identities = 9/16 (56%), Positives = 12/16 (74%)
Frame = -2
Query: 335 FFTATGAGASGSYAQS 288
FFT +G AS SYA++
Sbjct: 364 FFTPSGGAASSSYAKA 379
>pir||T05556 pectate lyase (EC 4.2.2.2) F22K18.20 - Arabidopsis thaliana
gi|4220512|emb|CAA22985.1| putative pectate lyase
[Arabidopsis thaliana] gi|7269329|emb|CAB79388.1|
putative pectate lyase [Arabidopsis thaliana]
Length = 404
Score = 85.1 bits (209), Expect(3) = 2e-25
Identities = 40/57 (70%), Positives = 46/57 (80%)
Frame = -1
Query: 501 IGGSANPTLHSQGHSFVAPNDRFSQEVTKH*GCTTRAEWKGWNWRSEGDLLLNGALF 331
IGGSANPT++SQG+ F+APN RFS+EVTKH +EWK WNWRS GDLLLNGA F
Sbjct: 306 IGGSANPTINSQGNRFLAPNIRFSKEVTKH-EDAPESEWKRWNWRSSGDLLLNGAFF 361
Score = 48.5 bits (114), Expect(3) = 2e-25
Identities = 21/31 (67%), Positives = 27/31 (86%)
Frame = -3
Query: 292 RASSLSARPSTLVGTITTGAGALNCRKGSHC 200
+ASSL A+PS+LVG +T+ +GALNCRKGS C
Sbjct: 374 KASSLGAKPSSLVGPLTSTSGALNCRKGSRC 404
Score = 23.1 bits (48), Expect(3) = 2e-25
Identities = 9/16 (56%), Positives = 12/16 (74%)
Frame = -2
Query: 335 FFTATGAGASGSYAQS 288
FFT +G AS SYA++
Sbjct: 360 FFTPSGGAASSSYAKA 375
>gb|AAF19195.1|AF206319_1 pectate lyase 1 [Musa acuminata]
Length = 407
Score = 80.1 bits (196), Expect(3) = 2e-24
Identities = 37/57 (64%), Positives = 45/57 (78%)
Frame = -1
Query: 501 IGGSANPTLHSQGHSFVAPNDRFSQEVTKH*GCTTRAEWKGWNWRSEGDLLLNGALF 331
IGGSA PT++SQG+ F+APNDRF++EVTK +EWK WNWRSEGD +LNGA F
Sbjct: 309 IGGSAAPTINSQGNRFLAPNDRFAKEVTKR-EDAQESEWKKWNWRSEGDQMLNGAFF 364
Score = 46.6 bits (109), Expect(3) = 2e-24
Identities = 21/31 (67%), Positives = 25/31 (79%)
Frame = -3
Query: 292 RASSLSARPSTLVGTITTGAGALNCRKGSHC 200
+ASSL AR S+LVGTIT AG L+C+KGS C
Sbjct: 377 KASSLGARSSSLVGTITVSAGVLSCKKGSRC 407
Score = 26.9 bits (58), Expect(3) = 2e-24
Identities = 11/16 (68%), Positives = 14/16 (86%)
Frame = -2
Query: 335 FFTATGAGASGSYAQS 288
FFT +GAGAS SYA++
Sbjct: 363 FFTPSGAGASSSYAKA 378
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 457,427,420
Number of Sequences: 1393205
Number of extensions: 10031874
Number of successful extensions: 26378
Number of sequences better than 10.0: 111
Number of HSP's better than 10.0 without gapping: 25237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26260
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15072921604
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
