Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004617A_C01 KMC004617A_c01
(546 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAA81879.1| geranylgeranyl pyrophosphate synthase-related pro... 92 5e-18
ref|NP_195558.1| geranylgeranyl pyrophosphate synthase (GGPS)(fa... 92 5e-18
gb|AAG40013.1|AF324662_1 AT4g38460 [Arabidopsis thaliana] 90 2e-17
gb|AAD16018.1| geranylgeranyl diphosphate synthase [Taxus canade... 79 3e-14
gb|AAN01135.1| geranyl diphosphate synthase [Abies grandis] 75 7e-13
>gb|AAA81879.1| geranylgeranyl pyrophosphate synthase-related protein
Length = 326
Score = 91.7 bits (226), Expect = 5e-18
Identities = 56/106 (52%), Positives = 71/106 (66%), Gaps = 4/106 (3%)
Frame = -2
Query: 545 CGGLLAGAEDDDIERLRRYGRAVGVLYSVVDDILEARENPEGGNDRKNKEKSYVKVYGVK 366
CGGLL GA +D+++ LRRYGRAVG+LY VVDDI E +K+KSY G +
Sbjct: 231 CGGLLGGATEDELQSLRRYGRAVGMLYQVVDDITE------------DKKKSYDG--GAE 276
Query: 365 KA-TEMAEELRDKAKEELDGFE-KY--GELVFPLYSFVDYAFDRSF 240
K EMAEEL++KAK+EL F+ KY G+ + PLY+FVDYA R F
Sbjct: 277 KGMMEMAEELKEKAKKELQVFDNKYGGGDTLVPLYTFVDYAAHRHF 322
>ref|NP_195558.1| geranylgeranyl pyrophosphate synthase
(GGPS)(farnesyltranstransferase), putative; protein id:
At4g38460.1, supported by cDNA: 28204., supported by
cDNA: gi_11908117, supported by cDNA: gi_12642929,
supported by cDNA: gi_13265402, supported by cDNA:
gi_13926333, supported by cDNA: gi_16323259, supported
by cDNA: gi_735879 [Arabidopsis thaliana]
gi|18421307|ref|NP_568514.1| Expressed protein
[Arabidopsis thaliana] gi|7447358|pir||T05674
farnesyltranstransferase homolog F20M13.20 - Arabidopsis
thaliana gi|4467133|emb|CAB37502.1| geranylgeranyl
pyrophosphate synthase-related protein [Arabidopsis
thaliana] gi|7270829|emb|CAB80510.1| geranylgeranyl
pyrophosphate synthase-related protein [Arabidopsis
thaliana] gi|11908118|gb|AAG41488.1|AF326906_1 putative
geranylgeranyl pyrophosphate synthase-related protein
[Arabidopsis thaliana]
gi|12642930|gb|AAK00407.1|AF339725_1 putative
geranylgeranyl pyrophosphate synthase-related protein
[Arabidopsis thaliana]
gi|13926334|gb|AAK49631.1|AF372915_1 AT4g38460/F20M13_20
[Arabidopsis thaliana] gi|16323260|gb|AAL15364.1|
AT4g38460/F20M13_20 [Arabidopsis thaliana]
gi|21555524|gb|AAM63877.1| geranylgeranyl pyrophosphate
synthase-related protein [Arabidopsis thaliana]
Length = 326
Score = 91.7 bits (226), Expect = 5e-18
Identities = 56/106 (52%), Positives = 71/106 (66%), Gaps = 4/106 (3%)
Frame = -2
Query: 545 CGGLLAGAEDDDIERLRRYGRAVGVLYSVVDDILEARENPEGGNDRKNKEKSYVKVYGVK 366
CGGLL GA +D+++ LRRYGRAVG+LY VVDDI E +K+KSY G +
Sbjct: 231 CGGLLGGATEDELQSLRRYGRAVGMLYQVVDDITE------------DKKKSYDG--GAE 276
Query: 365 KA-TEMAEELRDKAKEELDGFE-KY--GELVFPLYSFVDYAFDRSF 240
K EMAEEL++KAK+EL F+ KY G+ + PLY+FVDYA R F
Sbjct: 277 KGMMEMAEELKEKAKKELQVFDNKYGGGDTLVPLYTFVDYAAHRHF 322
>gb|AAG40013.1|AF324662_1 AT4g38460 [Arabidopsis thaliana]
Length = 326
Score = 89.7 bits (221), Expect = 2e-17
Identities = 55/106 (51%), Positives = 70/106 (65%), Gaps = 4/106 (3%)
Frame = -2
Query: 545 CGGLLAGAEDDDIERLRRYGRAVGVLYSVVDDILEARENPEGGNDRKNKEKSYVKVYGVK 366
CGGLL GA +D+++ LRRYGRAVG+LY VVDDI E +K+KSY G +
Sbjct: 231 CGGLLGGATEDELQSLRRYGRAVGMLYQVVDDITE------------DKKKSYDG--GAE 276
Query: 365 KA-TEMAEELRDKAKEELDGFE-KY--GELVFPLYSFVDYAFDRSF 240
K EMAEEL++KAK+EL F+ KY G+ + PLY+FVDY R F
Sbjct: 277 KGMMEMAEELKEKAKKELQVFDNKYGGGDTLVPLYTFVDYEAHRHF 322
>gb|AAD16018.1| geranylgeranyl diphosphate synthase [Taxus canadensis]
Length = 393
Score = 79.3 bits (194), Expect = 3e-14
Identities = 43/100 (43%), Positives = 60/100 (60%), Gaps = 5/100 (5%)
Frame = -2
Query: 542 GGLLAGAEDDDIERLRRYGRAVGVLYSVVDDILEARENPE-----GGNDRKNKEKSYVKV 378
GG+L GA +D+I R+RRY R VG+L+ VVDDIL+ ++ E G D + +Y K+
Sbjct: 290 GGILGGATEDEIARIRRYARCVGLLFQVVDDILDVTKSSEELGKTAGKDLLTDKATYPKL 349
Query: 377 YGVKKATEMAEELRDKAKEELDGFEKYGELVFPLYSFVDY 258
G++KA E A EL +AKEEL F++ PL DY
Sbjct: 350 MGLEKAKEFAAELATRAKEELSSFDQI--KAAPLLGLADY 387
>gb|AAN01135.1| geranyl diphosphate synthase [Abies grandis]
Length = 387
Score = 74.7 bits (182), Expect = 7e-13
Identities = 40/101 (39%), Positives = 61/101 (59%), Gaps = 5/101 (4%)
Frame = -2
Query: 545 CGGLLAGAEDDDIERLRRYGRAVGVLYSVVDDILEARENPE-----GGNDRKNKEKSYVK 381
CG ++ GA D+IER+RR+ R +G+L+ VVDDIL+ ++ E G D + + +Y K
Sbjct: 283 CGAIIGGASGDEIERIRRFARYLGLLFQVVDDILDVTKSSEDLGKTAGKDLVSDKATYPK 342
Query: 380 VYGVKKATEMAEELRDKAKEELDGFEKYGELVFPLYSFVDY 258
+ G++KA + EL +KAKEEL F+ PL+ DY
Sbjct: 343 LMGLEKAKGFSLELLNKAKEELSCFDPM--KAAPLFGLADY 381
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 457,540,010
Number of Sequences: 1393205
Number of extensions: 9428304
Number of successful extensions: 29976
Number of sequences better than 10.0: 235
Number of HSP's better than 10.0 without gapping: 28807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29853
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18660035355
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
