Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004616A_C01 KMC004616A_c01
(551 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_565142.1| F-box protein family, AtFBX3; protein id: At1g7... 90 2e-17
ref|NP_174889.1| hypothetical protein; protein id: At1g36970.1 [... 37 0.21
pir||G86488 protein T32E20.31 [imported] - Arabidopsis thaliana ... 37 0.21
ref|NP_651486.1| CG6478-PA [Drosophila melanogaster] gi|7301479|... 36 0.27
gb|AAL89909.1| RE40851p [Drosophila melanogaster] 36 0.27
>ref|NP_565142.1| F-box protein family, AtFBX3; protein id: At1g76920.1, supported by
cDNA: 15308., supported by cDNA: gi_17473629
[Arabidopsis thaliana] gi|25406478|pir||A96798
hypothetical protein F22K20.2 [imported] - Arabidopsis
thaliana gi|2829924|gb|AAC00632.1| Unknown protein
[Arabidopsis thaliana] gi|17473630|gb|AAL38278.1|
unknown protein [Arabidopsis thaliana]
gi|21553606|gb|AAM62699.1| F-box protein AtFBX3
[Arabidopsis thaliana]
Length = 374
Score = 90.1 bits (222), Expect = 2e-17
Identities = 43/70 (61%), Positives = 51/70 (72%)
Frame = -1
Query: 551 MFRCFQEAGKFKVFGAGDRVCFSAKRIGKLALWVRNADQGAEWRWIDNVPGNGDGLYRGF 372
M+R FQE+ KFKVFG GDRV FSAKR+GKLA+W D WRWI+ VPG DGL RGF
Sbjct: 309 MYRGFQESSKFKVFGGGDRVYFSAKRMGKLAMW----DCWQGWRWIEGVPGYADGLCRGF 364
Query: 371 VFEGRLDALP 342
VF+ +L +P
Sbjct: 365 VFDAKLTLMP 374
>ref|NP_174889.1| hypothetical protein; protein id: At1g36970.1 [Arabidopsis
thaliana]
Length = 439
Score = 36.6 bits (83), Expect = 0.21
Identities = 27/87 (31%), Positives = 40/87 (45%), Gaps = 14/87 (16%)
Frame = +3
Query: 297 SINNIPLPVSNYEP---SRQSIKPPFE-----------DESPVEPVAISGHVIDPPPLSP 434
++ ++ LP Y SRQS PPF+ ESPV PV S + I PP P
Sbjct: 192 ALKSVKLPKFRYHKISRSRQSTSPPFKKVRLALNHHTSSESPVNPVVYSPN-ITTPPSEP 250
Query: 435 LVSVADPERQLADPLGREANPIAGAED 515
L S+ + + L+D + ++G D
Sbjct: 251 LTSLHEGDNVLSDSVHDGDFAVSGDSD 277
>pir||G86488 protein T32E20.31 [imported] - Arabidopsis thaliana
gi|8778784|gb|AAF79792.1|AC020646_15 T32E20.31
[Arabidopsis thaliana]
Length = 416
Score = 36.6 bits (83), Expect = 0.21
Identities = 27/87 (31%), Positives = 40/87 (45%), Gaps = 14/87 (16%)
Frame = +3
Query: 297 SINNIPLPVSNYEP---SRQSIKPPFE-----------DESPVEPVAISGHVIDPPPLSP 434
++ ++ LP Y SRQS PPF+ ESPV PV S + I PP P
Sbjct: 182 ALKSVKLPKFRYHKISRSRQSTSPPFKKVRLALNHHTSSESPVNPVVYSPN-ITTPPSEP 240
Query: 435 LVSVADPERQLADPLGREANPIAGAED 515
L S+ + + L+D + ++G D
Sbjct: 241 LTSLHEGDNVLSDSVHDGDFAVSGDSD 267
>ref|NP_651486.1| CG6478-PA [Drosophila melanogaster] gi|7301479|gb|AAF56602.1|
CG6478-PA [Drosophila melanogaster]
Length = 286
Score = 36.2 bits (82), Expect = 0.27
Identities = 25/65 (38%), Positives = 31/65 (47%)
Frame = -2
Query: 547 SGASRRPGSSRSSAPAIGFASLPRGSASWRSGSATLTRGLSGGGSITCPEMATGSTGDSS 368
SG S PGS S +IG S+ GS G ++ GL GGGSI + GS G S
Sbjct: 30 SGLSFAPGSGSISGGSIGGGSIGGGSI----GGGSIGGGLIGGGSIGGGSIGGGSLGGSI 85
Query: 367 SKGGL 353
G +
Sbjct: 86 GGGSI 90
>gb|AAL89909.1| RE40851p [Drosophila melanogaster]
Length = 286
Score = 36.2 bits (82), Expect = 0.27
Identities = 25/65 (38%), Positives = 31/65 (47%)
Frame = -2
Query: 547 SGASRRPGSSRSSAPAIGFASLPRGSASWRSGSATLTRGLSGGGSITCPEMATGSTGDSS 368
SG S PGS S +IG S+ GS G ++ GL GGGSI + GS G S
Sbjct: 30 SGLSFAPGSGSISGGSIGGGSIGGGSI----GGGSIGGGLIGGGSIGGGSIGGGSLGGSI 85
Query: 367 SKGGL 353
G +
Sbjct: 86 GGGSI 90
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 492,812,087
Number of Sequences: 1393205
Number of extensions: 11685131
Number of successful extensions: 42590
Number of sequences better than 10.0: 101
Number of HSP's better than 10.0 without gapping: 37579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41762
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19234190289
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
