Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004615A_C01 KMC004615A_c01
(776 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_197665.1| unknown protein; protein id: At5g22730.1 [Arabi... 65 1e-09
dbj|BAB11268.1| emb|CAB62440.1~gene_id:MCD7.16~similar to unknow... 62 7e-09
ref|NP_680443.1| similar to F-box protein; protein id: At5g56325... 61 2e-08
ref|NP_564398.1| F-box protein; protein id: At1g32375.1 [Arabido... 61 2e-08
pir||F86448 F5D14.14 protein - Arabidopsis thaliana gi|8920612|g... 61 2e-08
>ref|NP_197665.1| unknown protein; protein id: At5g22730.1 [Arabidopsis thaliana]
gi|10178247|dbj|BAB11679.1| gene_id:MDJ22.15~unknown
protein [Arabidopsis thaliana]
Length = 457
Score = 64.7 bits (156), Expect = 1e-09
Identities = 44/145 (30%), Positives = 77/145 (52%), Gaps = 2/145 (1%)
Frame = -2
Query: 646 FVESPEFDKYLDDIPLFPNLTH--AELMLGFDMSWDLVLAILKHCPMLQNVVLDMQTHYA 473
FVE + K D +P F NL+ AE+ L F +++ IL+ CP L+++V+ ++ +
Sbjct: 317 FVEFLYYYKDFDPLPQFCNLSRLKAEISLYF---LEILPTILESCPNLKSLVMVLEFYLQ 373
Query: 472 YYKEPVWISPCCVPECLSSQLRTCDIINSEVKESELHFAKYIMQNSRVLRTMTIWTRGLS 293
EP+ S VP CL S L + +I + +++ A+Y ++NS VL+ + + R
Sbjct: 374 EEDEPIIFSS--VPRCLVSSLESVEIKKFNGRPAKMEVARYFLENSGVLQKLVLHLR--C 429
Query: 292 ELNVDKIELLKELFLCPRSSTICEL 218
+ D +LK+L PR S+ C +
Sbjct: 430 STHEDGFYILKDLLALPRGSSTCRI 454
>dbj|BAB11268.1| emb|CAB62440.1~gene_id:MCD7.16~similar to unknown protein
[Arabidopsis thaliana]
Length = 450
Score = 62.4 bits (150), Expect = 7e-09
Identities = 45/133 (33%), Positives = 64/133 (47%), Gaps = 3/133 (2%)
Frame = -2
Query: 601 LFPNLTHAELMLGFDMSWDLVLA-ILKHCPMLQNVVLDMQTHYAYYKEPV--WISPCCVP 431
+F L H EL D W +LA +L P L+ + L+ + H KEP W P VP
Sbjct: 318 IFSQLDHLELCTCDDSKWLNILAMLLPDSPKLRVLKLNDKYHPLRAKEPRPRWNEPSSVP 377
Query: 430 ECLSSQLRTCDIINSEVKESELHFAKYIMQNSRVLRTMTIWTRGLSELNVDKIELLKELF 251
EC+ L T ++ E E E +I +N +L+ TI + + K+E+L EL
Sbjct: 378 ECILYSLETFKWVHYEGMEEEKELVGFIFRNGSLLKKATIIPPNSIDSDT-KLEMLMELS 436
Query: 250 LCPRSSTICELSF 212
L R S IC+L F
Sbjct: 437 LSSRRSPICQLEF 449
>ref|NP_680443.1| similar to F-box protein; protein id: At5g56325.1 [Arabidopsis
thaliana]
Length = 264
Score = 61.2 bits (147), Expect = 2e-08
Identities = 41/132 (31%), Positives = 70/132 (52%), Gaps = 2/132 (1%)
Frame = -2
Query: 601 LFPNLTHAELMLGFDMSW-DLVLAILKHCPMLQNVVLDMQTHYAYYK-EPVWISPCCVPE 428
+F L H L + W +L++ +L++ P L+ + ++ + YY+ P W P +PE
Sbjct: 134 IFNRLVHLRLCT-CETEWINLLMRLLRNSPSLRVLEIEQVHYLRYYQPRPCWSEPSSIPE 192
Query: 427 CLSSQLRTCDIINSEVKESELHFAKYIMQNSRVLRTMTIWTRGLSELNVDKIELLKELFL 248
CL+ L T + E E A +I+++S L+ TI S ++ +K+E+ KEL L
Sbjct: 193 CLTHNLETFKWEHYYGAEEEKEVAAFILRSSICLKKATIILH-RSIVHDEKLEMNKELSL 251
Query: 247 CPRSSTICELSF 212
P S IC+L+F
Sbjct: 252 LPICSPICQLAF 263
>ref|NP_564398.1| F-box protein; protein id: At1g32375.1 [Arabidopsis thaliana]
Length = 422
Score = 60.8 bits (146), Expect = 2e-08
Identities = 36/113 (31%), Positives = 63/113 (54%), Gaps = 1/113 (0%)
Frame = -2
Query: 547 DLVLAILKHCPMLQNVVLDMQTHY-AYYKEPVWISPCCVPECLSSQLRTCDIINSEVKES 371
+L++ +L+ P L+ + L Y ++ P W P VPECL + L T + + E E
Sbjct: 311 NLLMCVLRDSPKLRELKLVKNHVYRSHQPRPCWNEPSAVPECLLTSLETLEWVKYEGTEE 370
Query: 370 ELHFAKYIMQNSRVLRTMTIWTRGLSELNVDKIELLKELFLCPRSSTICELSF 212
E A +I+++ L+ +TI ++ +++N K E+LKEL L R S C+++F
Sbjct: 371 EKEVAAFILRSGSCLKKVTISSKS-TDIN-KKFEMLKELSLLFRRSPTCQIAF 421
>pir||F86448 F5D14.14 protein - Arabidopsis thaliana
gi|8920612|gb|AAF81334.1|AC007767_14 Contains similarity
to a hypothetical protein T25K17.150 gi|7487424 from
Arabidopsis thaliana BAC T25K17 gb|AL049171
Length = 536
Score = 60.8 bits (146), Expect = 2e-08
Identities = 36/113 (31%), Positives = 63/113 (54%), Gaps = 1/113 (0%)
Frame = -2
Query: 547 DLVLAILKHCPMLQNVVLDMQTHY-AYYKEPVWISPCCVPECLSSQLRTCDIINSEVKES 371
+L++ +L+ P L+ + L Y ++ P W P VPECL + L T + + E E
Sbjct: 425 NLLMCVLRDSPKLRELKLVKNHVYRSHQPRPCWNEPSAVPECLLTSLETLEWVKYEGTEE 484
Query: 370 ELHFAKYIMQNSRVLRTMTIWTRGLSELNVDKIELLKELFLCPRSSTICELSF 212
E A +I+++ L+ +TI ++ +++N K E+LKEL L R S C+++F
Sbjct: 485 EKEVAAFILRSGSCLKKVTISSKS-TDIN-KKFEMLKELSLLFRRSPTCQIAF 535
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 628,006,155
Number of Sequences: 1393205
Number of extensions: 13350823
Number of successful extensions: 35381
Number of sequences better than 10.0: 132
Number of HSP's better than 10.0 without gapping: 34080
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35334
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 38375267554
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
