Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004609A_C01 KMC004609A_c01
(837 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAN03465.1| nucleolar histone deacetylase HD2-P39 [Glycine max] 157 1e-37
pir||T52287 probable histone deacetylase (EC 3.5.1.-) [imported]... 121 1e-26
ref|NP_197657.1| histone deacetylase-like protein; protein id: A... 117 3e-25
gb|AAF70196.1|AF255711_1 putative histone deacetylase HD2 [Oryza... 105 8e-22
gb|AAF68624.1|AF254072_1 histone deacetylase 2 isoform b [Zea mays] 104 1e-21
>gb|AAN03465.1| nucleolar histone deacetylase HD2-P39 [Glycine max]
Length = 295
Score = 157 bits (398), Expect = 1e-37
Identities = 84/148 (56%), Positives = 104/148 (69%), Gaps = 1/148 (0%)
Frame = -1
Query: 828 KIVDPKKDEEEADLDVSSPDVSGYEDDLISADEDSDDESDDESDDEEETPTPAKKVDQGK 649
K DPKKDE++ D S D++G ED+ S+DE DD + +E D ++ TPAKKVDQGK
Sbjct: 151 KAADPKKDEDDDSDDESDDDLAG-EDESGSSDEMDDDSNSEEESDGDDEETPAKKVDQGK 209
Query: 648 KRPNESASKTPVSGKKAKNATPEKPDGKKNVHTATPHPKKQDGKTPNSFGKNKSPNSGGK 469
KRPNESA+KTP+S KKAK ATPEK DGKK+VH ATPHP K+ GKTPNS K ++PNS G+
Sbjct: 210 KRPNESAAKTPISAKKAKTATPEKTDGKKSVHVATPHPSKKGGKTPNS-TKGQTPNSAGQ 268
Query: 468 FSNKSGGSKPFNSQQGWSS-KEVKHGGQ 388
S S K F ++ G K+ KHGGQ
Sbjct: 269 LSCAS-CKKSFTNEAGLQQHKKAKHGGQ 295
>pir||T52287 probable histone deacetylase (EC 3.5.1.-) [imported] - Arabidopsis
thaliana gi|2854070|gb|AAC02539.1| putative histone
deacetylase [Arabidopsis thaliana]
gi|11066137|gb|AAG28473.1|AF195546_1 putative histone
deacetylase [Arabidopsis thaliana]
Length = 305
Score = 121 bits (304), Expect = 1e-26
Identities = 71/151 (47%), Positives = 94/151 (62%), Gaps = 8/151 (5%)
Frame = -1
Query: 816 PKKDEE-EADLDVSSPDVSGYEDDLISADEDSDDESDDESDDEEETPTPAKKVDQGKKRP 640
P+ DEE E+D + S + E + ++DSDD+ +++S+DEEE TP K KKRP
Sbjct: 152 PESDEEDESDDEDESEEDDDSEKGMDVDEDDSDDDEEEDSEDEEEEETPKKPEPINKKRP 211
Query: 639 NESASKTPVSGKKAKNA-----TPEKPDGKKNVHTATPHPKKQDGKTPNSFGKNKSPNSG 475
NES SKTPVSGKKAK A TP+K + KK HTATPHP K+ GK+P N+SP SG
Sbjct: 212 NESVSKTPVSGKKAKPAAAPASTPQKTEKKKGGHTATPHPAKKGGKSP--VNANQSPKSG 269
Query: 474 GKFSNKSGGSKPFNS--QQGWSSKEVKHGGQ 388
G+ S + KPFNS Q G S+ + + G+
Sbjct: 270 GQSSGGNNNKKPFNSGKQFGGSNNKGSNKGK 300
>ref|NP_197657.1| histone deacetylase-like protein; protein id: At5g22650.1
[Arabidopsis thaliana] gi|10178239|dbj|BAB11671.1|
histone deacetylase-like protein [Arabidopsis thaliana]
gi|16649047|gb|AAL24375.1| histone deacetylase-like
protein [Arabidopsis thaliana]
gi|19310471|gb|AAL84970.1| AT5g22650/MDJ22_7
[Arabidopsis thaliana] gi|21689603|gb|AAM67423.1|
AT5g22650/MDJ22_7 [Arabidopsis thaliana]
Length = 306
Score = 117 bits (292), Expect = 3e-25
Identities = 71/152 (46%), Positives = 94/152 (61%), Gaps = 9/152 (5%)
Frame = -1
Query: 816 PKKDEE-EADLDVSSPDVSGYEDDLISADEDSDDESDDESDDEEETPTPAKKVDQGKKRP 640
P+ DEE E+D + S + E + ++DSDD+ +++S+DEEE TP K KKRP
Sbjct: 152 PESDEEDESDDEDESEEDDDSEKGMDVDEDDSDDDEEEDSEDEEEEETPKKPEPINKKRP 211
Query: 639 NESASKTPVSGKKAKNA-----TPEK-PDGKKNVHTATPHPKKQDGKTPNSFGKNKSPNS 478
NES SKTPVSGKKAK A TP+K + KK HTATPHP K+ GK+P N+SP S
Sbjct: 212 NESVSKTPVSGKKAKPAAAPASTPQKTEEKKKGGHTATPHPAKKGGKSP--VNANQSPKS 269
Query: 477 GGKFSNKSGGSKPFNS--QQGWSSKEVKHGGQ 388
GG+ S + KPFNS Q G S+ + + G+
Sbjct: 270 GGQSSGGNNNKKPFNSGKQFGGSNNKGSNKGK 301
>gb|AAF70196.1|AF255711_1 putative histone deacetylase HD2 [Oryza sativa]
Length = 297
Score = 105 bits (262), Expect = 8e-22
Identities = 66/145 (45%), Positives = 85/145 (58%), Gaps = 4/145 (2%)
Frame = -1
Query: 819 DPKKDEEEADLDVSSPDVSGYEDDLISADEDSDDESDDESDDEEETPTPAKKVDQGKKRP 640
D D++ A+ D D+S +DD S+++DS ++ +DESD EE+TP KK + GK++
Sbjct: 154 DDDDDDDSAEDDSQDEDLSPEDDDDDSSEDDSSEDDEDESD-EEDTP---KKPETGKRKV 209
Query: 639 NESASKTPVSGKKAKNATP--EKPDGKKNVHTATPHPKKQDGKTP-NSFGKNKSPNSGGK 469
E KTP S KKAK ATP +K KK VH ATPHP KQ KTP N K KSP SGG
Sbjct: 210 AEIVLKTPSSDKKAKIATPSGQKTGDKKGVHVATPHPAKQASKTPVNDKSKEKSPKSGGG 269
Query: 468 FSNKSGGSKPFNSQQGWSS-KEVKH 397
+ SK FNS+ S + KH
Sbjct: 270 SISCKSCSKTFNSEMALQSHSKAKH 294
>gb|AAF68624.1|AF254072_1 histone deacetylase 2 isoform b [Zea mays]
Length = 303
Score = 104 bits (260), Expect = 1e-21
Identities = 76/158 (48%), Positives = 91/158 (57%), Gaps = 11/158 (6%)
Frame = -1
Query: 828 KIVDPKKDEEEADLDVSSPDVSGYEDDL--ISADEDSDDESDDE---SDDEEETPTPAKK 664
K D D +E + D S D S D+ +S DE DD SD++ DDEEETPTP KK
Sbjct: 150 KSKDDSDDSDEDESDDSDEDDSDDSDEGEGLSPDEGDDDSSDEDDTSDDDEEETPTP-KK 208
Query: 663 VDQGKKRPNESASKTPVSGKKAKNATP--EKPDGKKN-VHTATPHPKKQDGKTPNSFGK- 496
+ GKKR E+A KTP+S KKAK ATP +K GKK H ATPHP K GKTP + K
Sbjct: 209 PEAGKKRGAENALKTPLSDKKAKVATPPAQKTGGKKGATHVATPHPAK--GKTPANNDKL 266
Query: 495 -NKSPNSGGKFSNKSGGSKPFNSQQGWSS-KEVKHGGQ 388
KSP SGG KS SK FNS+ + + KHG +
Sbjct: 267 TEKSPKSGGSVPCKS-CSKTFNSEMALQAHSKAKHGAK 303
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 697,802,884
Number of Sequences: 1393205
Number of extensions: 16183570
Number of successful extensions: 226011
Number of sequences better than 10.0: 4050
Number of HSP's better than 10.0 without gapping: 77984
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148121
length of database: 448,689,247
effective HSP length: 122
effective length of database: 278,718,237
effective search space used: 43480044972
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
