Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004607A_C01 KMC004607A_c01
(559 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_177267.1| hypothetical protein; protein id: At1g71110.1 [... 142 3e-33
dbj|BAB07947.1| P0684C01.8 [Oryza sativa (japonica cultivar-group)] 96 4e-19
gb|AAN72054.1| unknown protein [Arabidopsis thaliana] 91 7e-18
ref|NP_178935.1| unknown protein; protein id: At2g12400.1, suppo... 91 7e-18
dbj|BAC43452.1| unknown protein [Arabidopsis thaliana] 78 6e-14
>ref|NP_177267.1| hypothetical protein; protein id: At1g71110.1 [Arabidopsis
thaliana] gi|25372874|pir||F96735 hypothetical protein
F23N20.10 [imported] - Arabidopsis thaliana
gi|12323422|gb|AAG51685.1|AC016972_4 hypothetical
protein; 43000-45608 [Arabidopsis thaliana]
Length = 513
Score = 142 bits (358), Expect = 3e-33
Identities = 68/94 (72%), Positives = 75/94 (79%)
Frame = -3
Query: 557 CTTVGRVTPEIYAQLVAAVNASYALEHYTPLSLSLQNCNFVRDAFTGITSSHCPPFNHYL 378
CTTVGRVTP+ + QLVAAVN SYALEHYTP LS ++CNFVR+ F ITS +CPP L
Sbjct: 388 CTTVGRVTPDTFGQLVAAVNESYALEHYTPPLLSFRDCNFVRETFMSITSDYCPPLVRNL 447
Query: 377 KITNVGLGLISVGVLLCLVLWILYANRPPRGEVF 276
+I N GLGLISVGVLLCLVLWI YANRP R EVF
Sbjct: 448 RIVNAGLGLISVGVLLCLVLWIFYANRPQREEVF 481
>dbj|BAB07947.1| P0684C01.8 [Oryza sativa (japonica cultivar-group)]
Length = 484
Score = 95.5 bits (236), Expect = 4e-19
Identities = 48/93 (51%), Positives = 64/93 (68%)
Frame = -3
Query: 557 CTTVGRVTPEIYAQLVAAVNASYALEHYTPLSLSLQNCNFVRDAFTGITSSHCPPFNHYL 378
C+ +TPEIY+QLV A N SYAL HY PL L+LQ+C FVR+ F+ I S +CPP L
Sbjct: 309 CSGPRTITPEIYSQLVLAANVSYALYHYAPLMLNLQDCKFVRNTFSSIASQYCPPIWRDL 368
Query: 377 KITNVGLGLISVGVLLCLVLWILYANRPPRGEV 279
+ + GL LI+ G+ L L+L +L+A+RP R EV
Sbjct: 369 SLVSAGLALIASGLTLGLLL-MLFADRPQREEV 400
>gb|AAN72054.1| unknown protein [Arabidopsis thaliana]
Length = 541
Score = 91.3 bits (225), Expect = 7e-18
Identities = 44/96 (45%), Positives = 58/96 (59%)
Frame = -3
Query: 557 CTTVGRVTPEIYAQLVAAVNASYALEHYTPLSLSLQNCNFVRDAFTGITSSHCPPFNHYL 378
C+T GR+TP++Y+Q+ AAVN SY L Y P LQ C+FVR FT I HCP Y
Sbjct: 432 CSTPGRLTPKLYSQMAAAVNVSYGLYKYGPFLADLQGCDFVRSTFTDIERDHCPGLKRYT 491
Query: 377 KITNVGLGLISVGVLLCLVLWILYANRPPRGEVFVK 270
+ VGL ++S V+ LV W++YA R R V+ K
Sbjct: 492 QWIYVGLVVVSASVMSSLVFWVIYA-RERRHRVYTK 526
>ref|NP_178935.1| unknown protein; protein id: At2g12400.1, supported by cDNA:
gi_13877648 [Arabidopsis thaliana]
gi|25411456|pir||B84503 hypothetical protein At2g12400
[imported] - Arabidopsis thaliana
gi|4734014|gb|AAD28690.1| unknown protein [Arabidopsis
thaliana] gi|13877649|gb|AAK43902.1|AF370583_1 Unknown
protein [Arabidopsis thaliana]
Length = 302
Score = 91.3 bits (225), Expect = 7e-18
Identities = 44/96 (45%), Positives = 58/96 (59%)
Frame = -3
Query: 557 CTTVGRVTPEIYAQLVAAVNASYALEHYTPLSLSLQNCNFVRDAFTGITSSHCPPFNHYL 378
C+T GR+TP++Y+Q+ AAVN SY L Y P LQ C+FVR FT I HCP Y
Sbjct: 193 CSTPGRLTPKLYSQMAAAVNVSYGLYKYGPFLADLQGCDFVRSTFTDIERDHCPGLKRYT 252
Query: 377 KITNVGLGLISVGVLLCLVLWILYANRPPRGEVFVK 270
+ VGL ++S V+ LV W++YA R R V+ K
Sbjct: 253 QWIYVGLVVVSASVMSSLVFWVIYA-RERRHRVYTK 287
>dbj|BAC43452.1| unknown protein [Arabidopsis thaliana]
Length = 545
Score = 78.2 bits (191), Expect = 6e-14
Identities = 38/107 (35%), Positives = 59/107 (54%), Gaps = 1/107 (0%)
Frame = -3
Query: 557 CTTVGRVTPEIYAQLVAAVNASYALEHYTPLSLSLQNCNFVRDAFTGITSSHCPPFNHYL 378
CTT GR+TP +Y+Q+ + VN S L P + LQ+C++ + F IT+ HCP Y
Sbjct: 437 CTTTGRLTPALYSQMASGVNISTGLIRDAPFLVQLQDCSYAKQTFRDITNDHCPGLQRYG 496
Query: 377 KITNVGLGLISVGVLLCLVLWILYA-NRPPRGEVFVKLSLPDKIKNI 240
VGL +++ V+L L+ WI+Y+ R R E + S +I +
Sbjct: 497 YWVYVGLAILATAVMLSLMFWIIYSRERRHRKEALPEFSESKEIVRV 543
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 466,132,883
Number of Sequences: 1393205
Number of extensions: 10003340
Number of successful extensions: 22447
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 21797
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22436
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19808345223
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
