Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004606A_C01 KMC004606A_c01
(573 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P38661|ERP5_MEDSA PROBABLE PROTEIN DISULFIDE ISOMERASE P5 PRE... 123 1e-27
gb|AAG13988.1|AF298829_1 putative protein disulfide-isomerase [P... 122 3e-27
pir||T03644 probable protein disulfide-isomerase (EC 5.3.4.1) pr... 121 7e-27
ref|NP_182269.1| putative protein disulfide-isomerase; protein i... 102 4e-21
dbj|BAB67990.1| putative protein disulfide isomerase [Oryza sati... 95 7e-19
>sp|P38661|ERP5_MEDSA PROBABLE PROTEIN DISULFIDE ISOMERASE P5 PRECURSOR
gi|7488740|pir||T09614 probable protein
disulfide-isomerase (EC 5.3.4.1) precursor,
glucose-regulated [similarity] - alfalfa
gi|166380|gb|AAB46930.1| glucose-regulated endoplasmic
reticular protein precursor [Medicago sativa]
Length = 364
Score = 123 bits (309), Expect = 1e-27
Identities = 62/77 (80%), Positives = 70/77 (90%)
Frame = -2
Query: 566 EEKKAVFSRIEEEVGKLQGSAARHGKIYLKAAQNHLEKGSDYAMNEIQRLERILAKSISP 387
EEKKAVF+RIEEEV KL+GSA+R+GKIYLK ++ +LEKGSDYA NEIQRLER+L KSISP
Sbjct: 288 EEKKAVFARIEEEVKKLEGSASRYGKIYLKVSKKYLEKGSDYAKNEIQRLERLLEKSISP 347
Query: 386 AKADEFTLKKNILSAYA 336
AKADE TLKKNILS YA
Sbjct: 348 AKADELTLKKNILSTYA 364
>gb|AAG13988.1|AF298829_1 putative protein disulfide-isomerase [Prunus avium]
Length = 196
Score = 122 bits (306), Expect = 3e-27
Identities = 59/77 (76%), Positives = 70/77 (90%)
Frame = -2
Query: 566 EEKKAVFSRIEEEVGKLQGSAARHGKIYLKAAQNHLEKGSDYAMNEIQRLERILAKSISP 387
+EKK +FS+IEEEVGKL+GSAAR+GKIYLKAA+N L+KG+DYA NEIQRLERIL KS++P
Sbjct: 117 DEKKTIFSKIEEEVGKLEGSAARYGKIYLKAAENSLKKGADYAKNEIQRLERILEKSVNP 176
Query: 386 AKADEFTLKKNILSAYA 336
KADEFTLKKNIL +A
Sbjct: 177 TKADEFTLKKNILYTFA 193
>pir||T03644 probable protein disulfide-isomerase (EC 5.3.4.1) precursor -
common tobacco gi|1848212|emb|CAA72092.1| protein
disulfide-isomerase precursor [Nicotiana tabacum]
Length = 359
Score = 121 bits (303), Expect = 7e-27
Identities = 59/79 (74%), Positives = 72/79 (90%)
Frame = -2
Query: 572 SGEEKKAVFSRIEEEVGKLQGSAARHGKIYLKAAQNHLEKGSDYAMNEIQRLERILAKSI 393
+ EEKKAVFS++E+E GKL G AAR+GKIYLKAA++ +EKG+DYA NEIQRLER+LAKSI
Sbjct: 281 TNEEKKAVFSKMEDEAGKLNGFAARYGKIYLKAAKSSMEKGADYAKNEIQRLERMLAKSI 340
Query: 392 SPAKADEFTLKKNILSAYA 336
SPAK+DEFTLKKNIL+ +A
Sbjct: 341 SPAKSDEFTLKKNILATFA 359
>ref|NP_182269.1| putative protein disulfide-isomerase; protein id: At2g47470.1,
supported by cDNA: gi_18377788, supported by cDNA:
gi_20259222 [Arabidopsis thaliana]
gi|11132051|sp|O22263|PDA6_ARATH Probable protein
disulfide isomerase A6 precursor (P5)
gi|7488158|pir||T00437 probable protein
disulfide-isomerase (EC 5.3.4.1) precursor - Arabidopsis
thaliana gi|2529680|gb|AAC62863.1| putative protein
disulfide-isomerase [Arabidopsis thaliana]
gi|18377789|gb|AAL67044.1| putative protein
disulfide-isomerase [Arabidopsis thaliana]
gi|20259223|gb|AAM14327.1| putative protein
disulfide-isomerase [Arabidopsis thaliana]
gi|24417274|gb|AAN60247.1| unknown [Arabidopsis
thaliana]
Length = 361
Score = 102 bits (253), Expect = 4e-21
Identities = 49/78 (62%), Positives = 62/78 (78%)
Frame = -2
Query: 572 SGEEKKAVFSRIEEEVGKLQGSAARHGKIYLKAAQNHLEKGSDYAMNEIQRLERILAKSI 393
S +EKKAV SRIEEE L+GS R+GK+YLK A++++EKGSDYA E +RL R+L KSI
Sbjct: 280 SEDEKKAVLSRIEEEASTLKGSTTRYGKLYLKLAKSYIEKGSDYASKETERLGRVLGKSI 339
Query: 392 SPAKADEFTLKKNILSAY 339
SP KADE TLK+NIL+ +
Sbjct: 340 SPVKADELTLKRNILTTF 357
>dbj|BAB67990.1| putative protein disulfide isomerase [Oryza sativa (japonica
cultivar-group)]
Length = 371
Score = 94.7 bits (234), Expect = 7e-19
Identities = 43/79 (54%), Positives = 61/79 (76%)
Frame = -2
Query: 572 SGEEKKAVFSRIEEEVGKLQGSAARHGKIYLKAAQNHLEKGSDYAMNEIQRLERILAKSI 393
+ +++K + S +EEEV KL GSAA+HGK+Y+ A+ L+KG DY E +RLER+L KSI
Sbjct: 292 ANDKRKEILSNMEEEVVKLSGSAAKHGKVYIAIAKKILDKGHDYTKKETERLERMLEKSI 351
Query: 392 SPAKADEFTLKKNILSAYA 336
SP+KADEF +KKN+LS ++
Sbjct: 352 SPSKADEFIIKKNVLSTFS 370
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 476,558,656
Number of Sequences: 1393205
Number of extensions: 9728576
Number of successful extensions: 21374
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 20941
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21373
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21243732558
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
