Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004603A_C01 KMC004603A_c01
(503 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q40784|AAPC_PENCL POSSIBLE APOSPORY-ASSOCIATED PROTEIN C gi|5... 40 0.015
ref|NP_568301.1| putative protein; protein id: At5g14500.1, supp... 37 0.097
ref|NP_566143.1| expressed protein; protein id: At3g01590.1, sup... 37 0.097
gb|AAO42313.1| unknown protein [Arabidopsis thaliana] 37 0.097
gb|AAL27499.1|AF439827_1 AT3g01590/F4P13_13 [Arabidopsis thalian... 37 0.097
>sp|Q40784|AAPC_PENCL POSSIBLE APOSPORY-ASSOCIATED PROTEIN C gi|549984|gb|AAA80575.1|
possible apospory-associated protein
Length = 329
Score = 40.0 bits (92), Expect = 0.015
Identities = 18/20 (90%), Positives = 18/20 (90%)
Frame = -3
Query: 501 SAVPSSYCSGQLDPRKVLQG 442
SAVPSSYCSGQLDP KVL G
Sbjct: 310 SAVPSSYCSGQLDPLKVLHG 329
>ref|NP_568301.1| putative protein; protein id: At5g14500.1, supported by cDNA:
93845. [Arabidopsis thaliana]
Length = 306
Score = 37.4 bits (85), Expect = 0.097
Identities = 17/20 (85%), Positives = 17/20 (85%)
Frame = -3
Query: 501 SAVPSSYCSGQLDPRKVLQG 442
S V SSYCSGQLDPRKVL G
Sbjct: 285 SIVSSSYCSGQLDPRKVLYG 304
>ref|NP_566143.1| expressed protein; protein id: At3g01590.1, supported by cDNA:
41354., supported by cDNA: gi_16612257, supported by
cDNA: gi_20258972 [Arabidopsis thaliana]
gi|6016717|gb|AAF01543.1|AC009325_13 unknown protein
[Arabidopsis thaliana] gi|15810277|gb|AAL07026.1|
unknown protein [Arabidopsis thaliana]
gi|20258973|gb|AAM14202.1| unknown protein [Arabidopsis
thaliana] gi|21593681|gb|AAM65648.1| unknown
[Arabidopsis thaliana]
Length = 306
Score = 37.4 bits (85), Expect = 0.097
Identities = 17/20 (85%), Positives = 17/20 (85%)
Frame = -3
Query: 501 SAVPSSYCSGQLDPRKVLQG 442
S V SSYCSGQLDPRKVL G
Sbjct: 285 SIVSSSYCSGQLDPRKVLYG 304
>gb|AAO42313.1| unknown protein [Arabidopsis thaliana]
Length = 306
Score = 37.4 bits (85), Expect = 0.097
Identities = 17/20 (85%), Positives = 17/20 (85%)
Frame = -3
Query: 501 SAVPSSYCSGQLDPRKVLQG 442
S V SSYCSGQLDPRKVL G
Sbjct: 285 SIVSSSYCSGQLDPRKVLYG 304
>gb|AAL27499.1|AF439827_1 AT3g01590/F4P13_13 [Arabidopsis thaliana]
gi|23308359|gb|AAN18149.1| At3g01590/F4P13_13
[Arabidopsis thaliana]
Length = 306
Score = 37.4 bits (85), Expect = 0.097
Identities = 17/20 (85%), Positives = 17/20 (85%)
Frame = -3
Query: 501 SAVPSSYCSGQLDPRKVLQG 442
S V SSYCSGQLDPRKVL G
Sbjct: 285 SIVSSSYCSGQLDPRKVLYG 304
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 437,127,290
Number of Sequences: 1393205
Number of extensions: 9249674
Number of successful extensions: 18686
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 18273
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18683
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15362785481
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
