Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004602A_C01 KMC004602A_c01
(569 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_193689.1| ATP binding protein - like; protein id: At4g195... 85 7e-16
gb|AAM61690.1| ATP binding protein-like [Arabidopsis thaliana] 85 7e-16
gb|AAL31687.1|AC092390_8 putative nucleotide-binding protein [Or... 85 7e-16
ref|XP_216689.1| similar to hypothetical protein FLJ12660 [Homo ... 69 4e-11
dbj|BAB27209.1| unnamed protein product [Mus musculus] 69 5e-11
>ref|NP_193689.1| ATP binding protein - like; protein id: At4g19540.1, supported by
cDNA: 13295. [Arabidopsis thaliana]
gi|7486079|pir||T06147 hypothetical protein F24J7.100 -
Arabidopsis thaliana gi|2853081|emb|CAA16931.1| ATP
binding protein-like [Arabidopsis thaliana]
gi|7268750|emb|CAB78956.1| ATP binding protein-like
[Arabidopsis thaliana]
Length = 313
Score = 84.7 bits (208), Expect = 7e-16
Identities = 38/72 (52%), Positives = 56/72 (77%)
Frame = -3
Query: 567 SYIFGKEGTRKTATEMGLDFLGEIPLEVEVREACDKGHPIVLAAPDSVVSRAYVDVAEKV 388
S+IFGKEG R+TA + GL +GEIPLE+ +RE D+G P+V+++P S+VS+AY D+A+ V
Sbjct: 226 SFIFGKEGARRTAAKKGLKLIGEIPLEMSIREGSDEGVPVVVSSPGSIVSKAYQDLAQNV 285
Query: 387 VQKLKEQQFQPE 352
V+ LKE + P+
Sbjct: 286 VKGLKELRENPD 297
>gb|AAM61690.1| ATP binding protein-like [Arabidopsis thaliana]
Length = 313
Score = 84.7 bits (208), Expect = 7e-16
Identities = 38/72 (52%), Positives = 56/72 (77%)
Frame = -3
Query: 567 SYIFGKEGTRKTATEMGLDFLGEIPLEVEVREACDKGHPIVLAAPDSVVSRAYVDVAEKV 388
S+IFGKEG R+TA + GL +GEIPLE+ +RE D+G P+V+++P S+VS+AY D+A+ V
Sbjct: 226 SFIFGKEGARRTAAKKGLKLIGEIPLEMSIREGSDEGVPVVVSSPGSIVSKAYQDLAQNV 285
Query: 387 VQKLKEQQFQPE 352
V+ LKE + P+
Sbjct: 286 VKGLKELRDNPD 297
>gb|AAL31687.1|AC092390_8 putative nucleotide-binding protein [Oryza sativa]
Length = 292
Score = 84.7 bits (208), Expect = 7e-16
Identities = 40/79 (50%), Positives = 59/79 (74%), Gaps = 4/79 (5%)
Frame = -3
Query: 567 SYIFGKEGTRKTATEMGLDFLGEIPLEVEVREACDKGHPIVLAAPDSVVSRAYVDVAEKV 388
SYIFG+ G ++TA EM + +GEIPLE+++R D+G PIV+++PDS ++AY+ VAEKV
Sbjct: 214 SYIFGEGGGQRTAEEMDMKLIGEIPLEIDIRTGSDEGTPIVISSPDSASAQAYIQVAEKV 273
Query: 387 VQKLK----EQQFQPEIIL 343
+ +LK E+Q PEI+L
Sbjct: 274 IHRLKELAEERQMGPEILL 292
>ref|XP_216689.1| similar to hypothetical protein FLJ12660 [Homo sapiens] [Rattus
norvegicus]
Length = 136
Score = 68.9 bits (167), Expect = 4e-11
Identities = 29/65 (44%), Positives = 48/65 (73%)
Frame = -3
Query: 567 SYIFGKEGTRKTATEMGLDFLGEIPLEVEVREACDKGHPIVLAAPDSVVSRAYVDVAEKV 388
++IFG +G RK A + LD LG++PL + +REA D G P+V + P+S ++AY+++A +V
Sbjct: 68 THIFGADGARKLAQTLDLDVLGDVPLHLSIREASDMGQPVVFSQPESDEAKAYLNIASEV 127
Query: 387 VQKLK 373
V++LK
Sbjct: 128 VRRLK 132
>dbj|BAB27209.1| unnamed protein product [Mus musculus]
Length = 319
Score = 68.6 bits (166), Expect = 5e-11
Identities = 30/65 (46%), Positives = 47/65 (72%)
Frame = -3
Query: 567 SYIFGKEGTRKTATEMGLDFLGEIPLEVEVREACDKGHPIVLAAPDSVVSRAYVDVAEKV 388
++IFG +G RK A + LD LG++PL + +REA D G P+VL+ P S ++AY+ +A +V
Sbjct: 251 THIFGADGARKLAQTLDLDVLGDVPLHLSIREASDMGQPVVLSQPGSDEAKAYLHIASEV 310
Query: 387 VQKLK 373
V++LK
Sbjct: 311 VRRLK 315
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 468,403,575
Number of Sequences: 1393205
Number of extensions: 9457552
Number of successful extensions: 23867
Number of sequences better than 10.0: 182
Number of HSP's better than 10.0 without gapping: 23168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23854
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20956655091
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
