Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004599A_C01 KMC004599A_c01
(606 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T02366 hypothetical protein T8F5.21 - Arabidopsis thaliana ... 45 0.001
ref|NP_176722.2| unknown protein; protein id: At1g65430.1, suppo... 44 0.002
pir||B86252 hypothetical protein [imported] - Arabidopsis thalia... 34 1.3
ref|NP_036366.2| RING1 and YY1 binding protein; Ring1 interactor... 34 1.3
gb|AAM62864.1| unknown [Arabidopsis thaliana] 34 1.3
>pir||T02366 hypothetical protein T8F5.21 - Arabidopsis thaliana
gi|3335347|gb|AAC27149.1|AAC27149 Contains similarity to
ARI, RING finger protein gb|X98309 from Drosophila
melanogaster. ESTs gb|T44383, gb|W43120, gb|N65868,
gb|H36013, gb|AA042241, gb|T76869 and gb|AA042359 come
from this gene. [Arabidopsis thaliana]
Length = 644
Score = 44.7 bits (104), Expect = 0.001
Identities = 18/44 (40%), Positives = 28/44 (62%)
Frame = -3
Query: 592 GTVRTSSMSSSTTDDSHWSCEVCTFADVKSSTACQIRNQPRW*K 461
G + SS +S++D SHW CE CT+ + +S+T CQ+ R+ K
Sbjct: 535 GKTKGSSSKASSSDSSHWPCEYCTYVNPRSTTICQMCEHGRFIK 578
>ref|NP_176722.2| unknown protein; protein id: At1g65430.1, supported by cDNA:
gi_17065463 [Arabidopsis thaliana]
gi|17065464|gb|AAL32886.1| Unknown protein [Arabidopsis
thaliana] gi|22136140|gb|AAM91148.1| unknown protein
[Arabidopsis thaliana] gi|29125030|emb|CAD52890.1|
ARIADNE-like protein ARI8 [Arabidopsis thaliana]
Length = 567
Score = 43.9 bits (102), Expect = 0.002
Identities = 16/36 (44%), Positives = 25/36 (69%)
Frame = -3
Query: 592 GTVRTSSMSSSTTDDSHWSCEVCTFADVKSSTACQI 485
G + SS +S++D SHW CE CT+ + +S+T CQ+
Sbjct: 527 GKTKGSSSKASSSDSSHWPCEYCTYVNPRSTTICQM 562
>pir||B86252 hypothetical protein [imported] - Arabidopsis thaliana
gi|4835775|gb|AAD30241.1|AC007296_2 EST gb|F14156 comes
from this gene. [Arabidopsis thaliana]
gi|22135816|gb|AAM91094.1| At1g11800/F25C20_3
[Arabidopsis thaliana] gi|23308397|gb|AAN18168.1|
At1g11800/F25C20_3 [Arabidopsis thaliana]
Length = 441
Score = 34.3 bits (77), Expect = 1.3
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = -3
Query: 574 SMSSSTTDDSHWSCEVCTFADVKSSTACQI--RNQPRW*KFGFSFSGPLLPAGLRSTAAQ 401
S+S S D++ W+C+ CTF + ++ C + P GF L +GL S A
Sbjct: 55 SLSISANDEAKWACKACTFLNTYKNSICDVCGTRSPTSSLLGFQ---DLTDSGLESNDAD 111
Query: 400 AGV 392
+ V
Sbjct: 112 SSV 114
>ref|NP_036366.2| RING1 and YY1 binding protein; Ring1 interactor RYBP; YY1 and E4TF1
associated factor 1 [Homo sapiens]
gi|22209026|gb|AAH36459.1| RING1 and YY1 binding protein
[Homo sapiens]
Length = 228
Score = 34.3 bits (77), Expect = 1.3
Identities = 22/77 (28%), Positives = 31/77 (39%), Gaps = 2/77 (2%)
Frame = -3
Query: 604 GRGKGTVRTSSMSSSTTDDSHWSCEVCTFADVKSSTACQIRNQPRW*KFGFSFSGPLLPA 425
G K R + TD+ W C VCTF + + C I + + G S P + +
Sbjct: 4 GDKKSPTRPKRQAKPATDEGFWDCSVCTFRNSAEAFKCSICDVRK----GTSTRKPRINS 59
Query: 424 GL--RSTAAQAGVIPPP 380
L + A Q PPP
Sbjct: 60 QLVAQQVAQQYATPPPP 76
>gb|AAM62864.1| unknown [Arabidopsis thaliana]
Length = 426
Score = 34.3 bits (77), Expect = 1.3
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = -3
Query: 574 SMSSSTTDDSHWSCEVCTFADVKSSTACQI--RNQPRW*KFGFSFSGPLLPAGLRSTAAQ 401
S+S S D++ W+C+ CTF + ++ C + P GF L +GL S A
Sbjct: 40 SLSISANDEAKWACKACTFLNTYKNSICDVCGTRSPTSSLLGFQ---DLTDSGLESNDAD 96
Query: 400 AGV 392
+ V
Sbjct: 97 SSV 99
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 539,606,932
Number of Sequences: 1393205
Number of extensions: 12108147
Number of successful extensions: 28852
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 27797
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28842
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23997478008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
