Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004598A_C01 KMC004598A_c01
(587 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_041039.1| DNA polymerase [Equine herpesvirus 1] gi|118884... 32 5.9
ref|NP_220193.1| probable Yop proteins translocation protein C/g... 32 5.9
ref|NP_568136.1| putative protein; protein id: At5g04250.1, supp... 32 7.8
ref|NP_625667.1| conserved hypothetical protein [Streptomyces co... 32 7.8
emb|CAC05507.1| putative protein [Arabidopsis thaliana] 32 7.8
>ref|NP_041039.1| DNA polymerase [Equine herpesvirus 1]
gi|118884|sp|P28858|DPOL_HSVEB DNA polymerase
gi|67041|pir||DJBEC3 DNA-directed DNA polymerase (EC
2.7.7.7) - equine herpesvirus 1 (strain Ab4p)
gi|330822|gb|AAB02465.1| DNA polymerase
Length = 1220
Score = 32.0 bits (71), Expect = 5.9
Identities = 22/80 (27%), Positives = 36/80 (44%), Gaps = 5/80 (6%)
Frame = -1
Query: 569 VTSYGYLFSDDVEATLFMDQHGLMRRALASGVNSLAAGALIATGQGGNCPPGT-----GG 405
V Y Y+ +V++ + + RA+ +S A A + G GG G+ GG
Sbjct: 176 VRHYFYMAKAEVDSACGITTEAELVRAMVDCAHSSALSAALGNGNGGKQSGGSGGGWWGG 235
Query: 404 RDRSTNCFDQVKRGCHHDPY 345
+ S +CF +V+ CH Y
Sbjct: 236 KHVSADCF-KVETVCHTTLY 254
>ref|NP_220193.1| probable Yop proteins translocation protein C/general secretion
pathway protein [Chlamydia trachomatis]
gi|7469078|pir||F71486 probable yopC/gen secretion
protein D - Chlamydia trachomatis (serotype D, strain
UW3/Cx) gi|3329125|gb|AAC68269.1| probable Yop proteins
translocation protein C/general secretion pathway
protein [Chlamydia trachomatis]
Length = 921
Score = 32.0 bits (71), Expect = 5.9
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Frame = +1
Query: 379 SKQLVERSRP---PVPGGQFPPCPVAIKAPAARELTPLA 486
+K L ++S P P G FP PV++KA A+ TP+A
Sbjct: 71 AKNLAKKSSPGSKPTVGASFPSQPVSVKAAPAKPQTPVA 109
>ref|NP_568136.1| putative protein; protein id: At5g04250.1, supported by cDNA:
29990. [Arabidopsis thaliana] gi|21592575|gb|AAM64524.1|
unknown [Arabidopsis thaliana]
Length = 345
Score = 31.6 bits (70), Expect = 7.8
Identities = 15/38 (39%), Positives = 25/38 (65%)
Frame = -1
Query: 557 GYLFSDDVEATLFMDQHGLMRRALASGVNSLAAGALIA 444
GY+ +D V A + D+ + RA ASG+NSL+ +++A
Sbjct: 55 GYVDNDAVIAQFYQDELSRVARAEASGINSLSPTSVVA 92
>ref|NP_625667.1| conserved hypothetical protein [Streptomyces coelicolor A3(2)]
gi|7649595|emb|CAB88880.1| conserved hypothetical
protein [Streptomyces coelicolor A3(2)]
Length = 267
Score = 31.6 bits (70), Expect = 7.8
Identities = 19/51 (37%), Positives = 25/51 (48%), Gaps = 2/51 (3%)
Frame = +1
Query: 403 RPPVPGGQFPPCPVAIKAPA--ARELTPLANALLINPC*SMNKVASTSSEN 549
+P PGG F P P A APA +R+ P +AL+ C + N S N
Sbjct: 61 QPSAPGGGFTPDPYASNAPAGQSRQEDPSMSALVCTRCGNRNAENSRFCSN 111
>emb|CAC05507.1| putative protein [Arabidopsis thaliana]
Length = 395
Score = 31.6 bits (70), Expect = 7.8
Identities = 15/38 (39%), Positives = 25/38 (65%)
Frame = -1
Query: 557 GYLFSDDVEATLFMDQHGLMRRALASGVNSLAAGALIA 444
GY+ +D V A + D+ + RA ASG+NSL+ +++A
Sbjct: 55 GYVDNDAVIAQFYQDELSRVARAEASGINSLSPTSVVA 92
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 450,851,864
Number of Sequences: 1393205
Number of extensions: 8846713
Number of successful extensions: 29818
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 26839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29340
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22283372436
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
