Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004596A_C01 KMC004596A_c01
(415 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA04838.1| ORF [Lilium longiflorum] 119 1e-26
dbj|BAA82706.1| amino acid transporter-like protein 1 [Arabidops... 84 5e-16
ref|NP_175198.1| lysine and histidine specific transporter, puta... 84 5e-16
ref|NP_116401.1| T48 [Tupaia herpesvirus] gi|14210733|gb|AAK5709... 56 1e-07
pir||T04965 amino acid transport protein homolog T12J5.50 - Arab... 50 7e-06
>dbj|BAA04838.1| ORF [Lilium longiflorum]
Length = 518
Score = 119 bits (297), Expect = 1e-26
Identities = 71/142 (50%), Positives = 83/142 (58%), Gaps = 11/142 (7%)
Frame = +3
Query: 18 EAKEIWSAPITPRTGVTPVVASPPVSCPPSQLHSPSLTRSPLLENGDHPAHRRTSKTPKT 197
+A E+ S P+TPR+G TP V +PP+S PPSQLHSPSLTRSPLL
Sbjct: 4 QAMEVQSMPVTPRSG-TPRV-TPPISAPPSQLHSPSLTRSPLLG---------------- 45
Query: 198 PRTPRTPRTPRTPGGIITSLTPRFLTPLGSPVRKAL-----------RLTKLDPQDAWLP 344
P TPR R LTPL SP+RKA+ +T+LDPQD WLP
Sbjct: 46 ---PATPRASR-------------LTPLASPIRKAIVSMRGYLEEVGHVTRLDPQDEWLP 89
Query: 345 ITESRNGNKYYAAFHTLCSGIG 410
IT+SRNGN YY+AFHTL SGIG
Sbjct: 90 ITQSRNGNSYYSAFHTLSSGIG 111
>dbj|BAA82706.1| amino acid transporter-like protein 1 [Arabidopsis thaliana]
Length = 519
Score = 83.6 bits (205), Expect = 5e-16
Identities = 43/87 (49%), Positives = 57/87 (65%), Gaps = 12/87 (13%)
Frame = +3
Query: 186 TPKTPRTPRTPRTPRTPGGIITS-LTPRFLTPLGSPVRKAL-----------RLTKLDPQ 329
TP R+PR P + TS ++PRFL+P+G+P+++ L LTKL+PQ
Sbjct: 25 TPSGQRSPRPATKPSSATWTPTSFISPRFLSPIGTPMKRVLVNMKGYLEEVGHLTKLNPQ 84
Query: 330 DAWLPITESRNGNKYYAAFHTLCSGIG 410
DAWLPITESRNGN +YAAFH L +G+G
Sbjct: 85 DAWLPITESRNGNAHYAAFHNLNAGVG 111
>ref|NP_175198.1| lysine and histidine specific transporter, putative; protein id:
At1g47670.1, supported by cDNA: gi_17529317 [Arabidopsis
thaliana] gi|25405238|pir||F96517 hypothetical protein
F16N3.4 [imported] - Arabidopsis thaliana
gi|5668793|gb|AAD46019.1|AC007519_4 Similar to gb|U39782
lysine and histidine specific transporter from
Arabidopsis thaliana. EST gb|Z17527 comes from this
gene gi|17529318|gb|AAL38886.1| putative lysine and
histidine specific transporter protein [Arabidopsis
thaliana] gi|21436363|gb|AAM51351.1| putative lysine and
histidine specific transporter protein [Arabidopsis
thaliana]
Length = 519
Score = 83.6 bits (205), Expect = 5e-16
Identities = 43/87 (49%), Positives = 57/87 (65%), Gaps = 12/87 (13%)
Frame = +3
Query: 186 TPKTPRTPRTPRTPRTPGGIITS-LTPRFLTPLGSPVRKAL-----------RLTKLDPQ 329
TP R+PR P + TS ++PRFL+P+G+P+++ L LTKL+PQ
Sbjct: 25 TPSGQRSPRPATKPSSATWTPTSFISPRFLSPIGTPMKRVLVNMKGYLEEVGHLTKLNPQ 84
Query: 330 DAWLPITESRNGNKYYAAFHTLCSGIG 410
DAWLPITESRNGN +YAAFH L +G+G
Sbjct: 85 DAWLPITESRNGNAHYAAFHNLNAGVG 111
>ref|NP_116401.1| T48 [Tupaia herpesvirus] gi|14210733|gb|AAK57096.1| T48 [Tupaia
herpesvirus]
Length = 2295
Score = 55.8 bits (133), Expect = 1e-07
Identities = 35/77 (45%), Positives = 38/77 (48%), Gaps = 10/77 (12%)
Frame = +3
Query: 36 SAPITPRTGVTPVVASP---PVSCPPSQLHSP-------SLTRSPLLENGDHPAHRRTSK 185
+AP PR + SP P PP SP S RSP G PA RR
Sbjct: 257 AAPSAPRPQSRSPLRSPLRSPRQSPPRSPRSPRRRSPSRSPPRSPATRGG--PARRRAKS 314
Query: 186 TPKTPRTPRTPRTPRTP 236
TP+TPR PRTPRTPRTP
Sbjct: 315 TPRTPRAPRTPRTPRTP 331
Score = 32.3 bits (72), Expect = 1.4
Identities = 29/95 (30%), Positives = 37/95 (38%)
Frame = +3
Query: 66 TPVVASPPVSCPPSQLHSPSLTRSPLLENGDHPAHRRTSKTPKTPRTPRTPRTPRTPGGI 245
TP + P S P Q SP RSPL P P++PR+PR R+P
Sbjct: 252 TPATTAAP-SAPRPQSRSP--LRSPLRSPRQSP--------PRSPRSPRRRSPSRSP--- 297
Query: 246 ITSLTPRFLTPLGSPVRKALRLTKLDPQDAWLPIT 350
PR G P R+ + T P+ P T
Sbjct: 298 -----PRSPATRGGPARRRAKSTPRTPRAPRTPRT 327
>pir||T04965 amino acid transport protein homolog T12J5.50 - Arabidopsis
thaliana gi|4455344|emb|CAB36725.1| amino acid
permease-like protein [Arabidopsis thaliana]
gi|7270469|emb|CAB80235.1| amino acid permease-like
protein [Arabidopsis thaliana]
Length = 473
Score = 50.1 bits (118), Expect = 7e-06
Identities = 21/30 (70%), Positives = 23/30 (76%)
Frame = +3
Query: 324 PQDAWLPITESRNGNKYYAAFHTLCSGIGI 413
P + WLPITESR GN Y A FH LCSGIG+
Sbjct: 47 PVEEWLPITESRKGNVYTATFHLLCSGIGL 76
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 388,238,264
Number of Sequences: 1393205
Number of extensions: 8313776
Number of successful extensions: 47479
Number of sequences better than 10.0: 908
Number of HSP's better than 10.0 without gapping: 37085
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44071
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 6990169968
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
