>KMC004595A_C01 KMC004595A_c01
ggtaatataatcttatatgtaaggaacagttttaaaacctgaggaagaaatagtagtagt
gaaatgttatgtgttttagtAAGTACCAGCGTGTGCAAAAGAAATTATCACTCTAGGAAC
CTTACATGAAAACCAATTAGCACCGTATTTGGACATTAATATTTGTAGGAGATAAGAACC
AAAAATACTGATGTTATCTTGAATATGCAGGGATAATACTTGGAGAAAATCTGAAACTGT
TGACTTCATGGCCCTTCAGCAATAAATCTTCTGGGCTTAGCCAATTTCCATACTAAGGTG
CAACTCCGATCCGATTACATCTTTATTTGCATATGTTTGCTCGATTCCTCCCATTGTGTA
GCTTCGATGCAAGGTGCTTCCGTTCATCGTACGAAAATCAAGTTTCTGAAACTTGTCGGC
GAAGAGTCGCCAGAGAAAGTTGCGGCTCACGGGGTTGACGGAGGAACTGTCGCCGGAGAC
ACAAAGGAAGGGTGTTCCTTCATCCTTTCGC

BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KMC004595A_C01 KMC004595A_c01
         (511 letters)

Database: nr 
           1,393,205 sequences; 448,689,247 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_435887.1| hypothetical protein [Sinorhizobium meliloti] g...    33  1.9
ref|NP_057547.3| hypothetical protein HSPC195 [Homo sapiens] gi|...    33  2.5
gb|EAA16600.1| hypothetical protein [Plasmodium yoelii yoelii]         32  5.5
pir||JQ1161 Gag protein - Maedi/Visna virus (strain EV1)               32  5.5
gb|AAH36469.1| Unknown (protein for MGC:41761) [Homo sapiens]          31  9.5

>ref|NP_435887.1| hypothetical protein [Sinorhizobium meliloti]
           gi|25504527|pir||A95342 hypothetical protein SMa1178
           [imported] - Sinorhizobium meliloti (strain 1021)
           magaplasmid pSymA gi|14523754|gb|AAK65299.1|
           hypothetical protein [Sinorhizobium meliloti]
          Length = 311

 Score = 33.1 bits (74), Expect = 1.9
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = +3

Query: 297 GATPIRLHLYLHMFARFLPLCSFDARCFRSSYENQVSETCRRRV 428
           G TP+  H+  ++  R +PLC F   C+    E++ +E+ R RV
Sbjct: 251 GETPLLQHVPGNVTGRLVPLCEFLLDCYLDLAEHESTESARARV 294

>ref|NP_057547.3| hypothetical protein HSPC195 [Homo sapiens]
           gi|7106780|gb|AAF36115.1|AF151029_1 HSPC195 [Homo
           sapiens]
          Length = 198

 Score = 32.7 bits (73), Expect = 2.5
 Identities = 33/93 (35%), Positives = 38/93 (40%), Gaps = 20/93 (21%)
 Frame = +3

Query: 270 SGLSQFPY*GATPIRLHLY-------------LHM--FARF-----LPLCSFDARCFRSS 389
           +G S FPY GA PI   L+             LHM   A +     LPL S  AR  RS 
Sbjct: 79  NGQSDFPYLGAFPINPGLFIMTPAGVFLAESALHMAGLAEYPMQGELPLPSAPAR--RSG 136

Query: 390 YENQVSETCRRRVARESCGSRG*RRNCRRRHKG 488
               +   CRRR+  E C S      CR R  G
Sbjct: 137 NAAALCAPCRRRINCEQCSS------CRNRKTG 163

>gb|EAA16600.1| hypothetical protein [Plasmodium yoelii yoelii]
          Length = 472

 Score = 31.6 bits (70), Expect = 5.5
 Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
 Frame = -3

Query: 236 FQIFSKYYPCIFKITSVFLVLISYKY*CPNTVLIGFHVRFLE**FLLH--TLVLTKTHNI 63
           F I SK Y  + K+  +++ L   +Y C + +  G  + FL+  F L+   L + K   I
Sbjct: 268 FFILSKDYEIVHKVILLYINLSKEEYMCDDMINNGLFINFLDILFDLYYINLKIKKEICI 327

Query: 62  SLLLFLPQVLKLFLTYKIIL 3
           ++L  + QVL  +  Y I L
Sbjct: 328 NILCIIGQVLN-YKKYAIFL 346

>pir||JQ1161 Gag protein - Maedi/Visna virus (strain EV1)
          Length = 448

 Score = 31.6 bits (70), Expect = 5.5
 Identities = 12/44 (27%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +3

Query: 372 RCFRSSYENQVSETCRRRVARESCGSRG-*RRNCRRRHKGRVFL 500
           +C+    +  ++  CR+ +    CG RG  R++CR+++K  + L
Sbjct: 387 KCYNCGKQGHLARQCRQGIICHQCGKRGHVRKDCRQKNKDNIQL 430

>gb|AAH36469.1| Unknown (protein for MGC:41761) [Homo sapiens]
          Length = 403

 Score = 30.8 bits (68), Expect = 9.5
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +3

Query: 357 CSFDARCFRSSYENQVSETCRRRVARESCGSRG 455
           C+ D RCFR   E  +S  CR+ +    CG RG
Sbjct: 348 CTQD-RCFRCGEEGHLSPYCRKGIVCNLCGKRG 379

  Database: nr
    Posted date:  Apr 1, 2003  2:05 AM
  Number of letters in database: 448,689,247
  Number of sequences in database:  1,393,205
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 431,168,863
Number of Sequences: 1393205
Number of extensions: 8937957
Number of successful extensions: 20342
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 19865
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20332
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15942513235
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

EST assemble image

clone accession position 1 MR064d01_f BP080905 1 439 2 MWL054a05_f AV769500 124 511

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