Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004593A_C01 KMC004593A_c01
(494 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_197759.1| putative protein; protein id: At5g23700.1 [Arab... 111 5e-24
ref|NP_194237.1| putative protein; protein id: At4g25070.1 [Arab... 110 9e-24
pir||T00945 hypothetical protein T3F12.6 - Arabidopsis thaliana 106 2e-22
ref|NP_192603.1| hypothetical protein; protein id: At4g08630.1 [... 106 2e-22
ref|NP_190455.2| putative protein; protein id: At3g48860.1, supp... 105 3e-22
>ref|NP_197759.1| putative protein; protein id: At5g23700.1 [Arabidopsis thaliana]
gi|8809690|dbj|BAA97231.1|
emb|CAB87914.1~gene_id:MQM1.3~similar to unknown protein
[Arabidopsis thaliana]
Length = 497
Score = 111 bits (277), Expect = 5e-24
Identities = 57/85 (67%), Positives = 63/85 (74%), Gaps = 5/85 (5%)
Frame = -2
Query: 493 EAWLTYFWRRALFHSVEEDIAEERLQFWIVRS-GQSPTSHDAVDVERGLLELRKLGIEQQ 317
+AWL YFW RA HSVEEDIA+ER QFW RS G+SPTS DAVDVERGLLELRKLG+EQQ
Sbjct: 409 QAWLMYFWGRAKLHSVEEDIADERFQFWTSRSEGKSPTSQDAVDVERGLLELRKLGVEQQ 468
Query: 316 LWEASRKGIDH----PDRASVVTNH 254
LWEA RK D S ++NH
Sbjct: 469 LWEACRKETDQLLPSSSPTSTLSNH 493
>ref|NP_194237.1| putative protein; protein id: At4g25070.1 [Arabidopsis thaliana]
gi|7485452|pir||T05528 hypothetical protein F13M23.210 -
Arabidopsis thaliana gi|4455250|emb|CAB36749.1| putative
protein [Arabidopsis thaliana]
gi|7269357|emb|CAB79416.1| putative protein [Arabidopsis
thaliana]
Length = 317
Score = 110 bits (275), Expect = 9e-24
Identities = 51/66 (77%), Positives = 55/66 (83%)
Frame = -2
Query: 493 EAWLTYFWRRALFHSVEEDIAEERLQFWIVRSGQSPTSHDAVDVERGLLELRKLGIEQQL 314
EAWL YFW+RA H VE DIAEERLQFWI R GQ +SHDA+DVERG+ ELRKLGIEQQL
Sbjct: 233 EAWLLYFWKRAKIHGVESDIAEERLQFWINRLGQHSSSHDAIDVERGMRELRKLGIEQQL 292
Query: 313 WEASRK 296
WE SRK
Sbjct: 293 WETSRK 298
>pir||T00945 hypothetical protein T3F12.6 - Arabidopsis thaliana
Length = 781
Score = 106 bits (264), Expect = 2e-22
Identities = 47/75 (62%), Positives = 58/75 (76%)
Frame = -2
Query: 493 EAWLTYFWRRALFHSVEEDIAEERLQFWIVRSGQSPTSHDAVDVERGLLELRKLGIEQQL 314
+AWL+YFWRRA H +E D+ +ERLQ+WI + +S TS DAVDVERGL+ELRKL IE QL
Sbjct: 701 QAWLSYFWRRAKNHEIESDLVDERLQYWINQGTRSATSQDAVDVERGLMELRKLNIESQL 760
Query: 313 WEASRKGIDHPDRAS 269
W+ SRKG+DH S
Sbjct: 761 WQKSRKGLDHESNPS 775
>ref|NP_192603.1| hypothetical protein; protein id: At4g08630.1 [Arabidopsis
thaliana] gi|25407438|pir||D85086 hypothetical protein
AT4g08630 [imported] - Arabidopsis thaliana
gi|4309972|gb|AAB81875.2|AAB81875 hypothetical protein
[Arabidopsis thaliana] gi|7267505|emb|CAB77988.1|
hypothetical protein [Arabidopsis thaliana]
Length = 779
Score = 106 bits (264), Expect = 2e-22
Identities = 47/75 (62%), Positives = 58/75 (76%)
Frame = -2
Query: 493 EAWLTYFWRRALFHSVEEDIAEERLQFWIVRSGQSPTSHDAVDVERGLLELRKLGIEQQL 314
+AWL+YFWRRA H +E D+ +ERLQ+WI + +S TS DAVDVERGL+ELRKL IE QL
Sbjct: 699 QAWLSYFWRRAKNHEIESDLVDERLQYWINQGTRSATSQDAVDVERGLMELRKLNIESQL 758
Query: 313 WEASRKGIDHPDRAS 269
W+ SRKG+DH S
Sbjct: 759 WQKSRKGLDHESNPS 773
>ref|NP_190455.2| putative protein; protein id: At3g48860.1, supported by cDNA:
gi_20260533 [Arabidopsis thaliana]
gi|20260534|gb|AAM13165.1| putative protein [Arabidopsis
thaliana]
Length = 577
Score = 105 bits (262), Expect = 3e-22
Identities = 51/71 (71%), Positives = 57/71 (79%), Gaps = 2/71 (2%)
Frame = -2
Query: 493 EAWLTYFWRRALFHSVEEDIAEERLQFWIVRSG--QSPTSHDAVDVERGLLELRKLGIEQ 320
+AWL YFW RA H VE+DIAEER+Q WI RS TSHDA+DVERGL+ELRKLGIEQ
Sbjct: 491 QAWLMYFWGRAKLHGVEDDIAEERVQLWISRSSGKSQTTSHDALDVERGLIELRKLGIEQ 550
Query: 319 QLWEASRKGID 287
QLWEASR+ ID
Sbjct: 551 QLWEASRREID 561
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 394,961,432
Number of Sequences: 1393205
Number of extensions: 8009727
Number of successful extensions: 23211
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 22427
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23195
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14493193850
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
