>KMC004592A_C01 KMC004592A_c01
aTCAAAAAAGTCTAGGATAAAGTTGAAGGATTAAGTCTTACAAAAGTAAACAAAATTAAA
TATCAAAACTAAAACAACACAAGCCATTGAATCCATCTTAACCCTAATAATTGAATCTCT
CCCATCATGGACAACAAAAAAGATGACACACCATTTAGTCTCCCTTCTTCCTAAAGGAGC
AACCCTCTGTAAGCCTGGCACGCCCACCGGTCGGCTGGCACAGAACGGTCTGGCAGTTGC
CGCACACCACAACAGTCTGAGAGTGGCTAAACACAGTTGTTATGTTGAAGCATCCCTGGC
ACTTAACATCCATGAAGAATGAGTTTGGGGACTGCACAAGACGCTTGAGTTTGTGCTTCC
TCTTTTCGAGCTCAGCTGGAGGG

BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KMC004592A_C01 KMC004592A_c01
         (383 letters)

Database: nr 
           1,393,205 sequences; 448,689,247 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||T47903 ribosomal protein S27 - Arabidopsis thaliana (fragme...   158  2e-38
ref|NP_191670.1| ribosomal protein S27; protein id: At3g61110.1 ...   158  2e-38
gb|AAM66954.1| ribosomal protein S27 [Arabidopsis thaliana]           154  3e-37
ref|NP_199604.1| ribosomal protein S27; protein id: At5g47930.1,...   152  1e-36
ref|NP_182095.1| putative ribosomal protein S27; protein id: At2...   150  4e-36

>pir||T47903 ribosomal protein S27 - Arabidopsis thaliana (fragment)
           gi|6850878|emb|CAB71041.1| ribosomal protein S27
           [Arabidopsis thaliana]
          Length = 85

 Score =  158 bits (399), Expect = 2e-38
 Identities = 71/75 (94%), Positives = 75/75 (99%)
 Frame = -2

Query: 382 PPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGG 203
           PPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQT+LCQPTGG
Sbjct: 11  PPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTILCQPTGG 70

Query: 202 RARLTEGCSFRKKGD 158
           +A+LTEGCSFR+KGD
Sbjct: 71  KAKLTEGCSFRRKGD 85

>ref|NP_191670.1| ribosomal protein S27; protein id: At3g61110.1 [Arabidopsis
           thaliana] gi|11276658|pir||T50532 ribosomal protein S27
           - Arabidopsis thaliana gi|4193382|gb|AAD10029.1|
           ribosomal protein S27 [Arabidopsis thaliana]
           gi|4193384|gb|AAD10030.1| ribosomal protein S27
           [Arabidopsis thaliana] gi|8388627|emb|CAB94147.1|
           ribosomal protein S27 [Arabidopsis thaliana]
           gi|15724226|gb|AAL06506.1|AF412053_1
           AT3g61110/T27I15_200 [Arabidopsis thaliana]
           gi|19699108|gb|AAL90920.1| AT3g61110/T27I15_200
           [Arabidopsis thaliana]
          Length = 86

 Score =  158 bits (399), Expect = 2e-38
 Identities = 71/75 (94%), Positives = 75/75 (99%)
 Frame = -2

Query: 382 PPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGG 203
           PPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQT+LCQPTGG
Sbjct: 12  PPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTILCQPTGG 71

Query: 202 RARLTEGCSFRKKGD 158
           +A+LTEGCSFR+KGD
Sbjct: 72  KAKLTEGCSFRRKGD 86

>gb|AAM66954.1| ribosomal protein S27 [Arabidopsis thaliana]
          Length = 84

 Score =  154 bits (388), Expect = 3e-37
 Identities = 71/73 (97%), Positives = 72/73 (98%)
 Frame = -2

Query: 382 PPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGG 203
           PPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGG
Sbjct: 12  PPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGG 71

Query: 202 RARLTEGCSFRKK 164
           +ARL EGCSFRKK
Sbjct: 72  KARLQEGCSFRKK 84

>ref|NP_199604.1| ribosomal protein S27; protein id: At5g47930.1, supported by cDNA:
           8698., supported by cDNA: gi_15028164, supported by
           cDNA: gi_19310838 [Arabidopsis thaliana]
           gi|9758519|dbj|BAB09045.1| ribosomal protein S27
           [Arabidopsis thaliana] gi|15028165|gb|AAK76706.1|
           putative ribosomal protein S27 [Arabidopsis thaliana]
           gi|19310839|gb|AAL85150.1| putative ribosomal protein
           S27 [Arabidopsis thaliana]
          Length = 84

 Score =  152 bits (383), Expect = 1e-36
 Identities = 70/73 (95%), Positives = 71/73 (96%)
 Frame = -2

Query: 382 PPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGG 203
           PP ELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGG
Sbjct: 12  PPPELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGG 71

Query: 202 RARLTEGCSFRKK 164
           +ARL EGCSFRKK
Sbjct: 72  KARLQEGCSFRKK 84

>ref|NP_182095.1| putative ribosomal protein S27; protein id: At2g45710.1, supported
           by cDNA: 18662., supported by cDNA: gi_18252882
           [Arabidopsis thaliana] gi|7440568|pir||T02476 40S
           ribosomal protein S27 [imported] - Arabidopsis thaliana
           gi|3386624|gb|AAC28554.1| putative ribosomal protein S27
           [Arabidopsis thaliana] gi|18252883|gb|AAL62368.1|
           putative ribosomal protein S27 [Arabidopsis thaliana]
           gi|20197050|gb|AAM14895.1| putative ribosomal protein
           S27 [Arabidopsis thaliana] gi|21553959|gb|AAM63040.1|
           putative ribosomal protein S27 [Arabidopsis thaliana]
           gi|23197762|gb|AAN15408.1| putative ribosomal protein
           S27 [Arabidopsis thaliana]
          Length = 84

 Score =  150 bits (379), Expect = 4e-36
 Identities = 68/73 (93%), Positives = 72/73 (98%)
 Frame = -2

Query: 382 PPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGG 203
           PPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV+CGNCQT+LC PTGG
Sbjct: 12  PPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVMCGNCQTLLCTPTGG 71

Query: 202 RARLTEGCSFRKK 164
           +A+LTEGCSFRKK
Sbjct: 72  KAKLTEGCSFRKK 84

  Database: nr
    Posted date:  Apr 1, 2003  2:05 AM
  Number of letters in database: 448,689,247
  Number of sequences in database:  1,393,205
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 331,705,429
Number of Sequences: 1393205
Number of extensions: 7063660
Number of successful extensions: 24186
Number of sequences better than 10.0: 112
Number of HSP's better than 10.0 without gapping: 23611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24174
length of database: 448,689,247
effective HSP length: 103
effective length of database: 305,189,132
effective search space used: 7324539168
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

EST assemble image

clone accession position 1 MR063h12_f BP080875 1 383 2 MR067c01_f BP081135 2 348

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