Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004590A_C01 KMC004590A_c01
(710 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_188267.1| putative lectin; protein id: At3g16460.1 [Arabi... 62 1e-08
ref|NP_032862.1| per-hexamer repeat gene 5 [Mus musculus] gi|250... 60 4e-08
pir||UMMS period clock protein - mouse (fragment) gi|1334150|emb... 60 4e-08
pir||C26427 period clock protein type C - fruit fly (Drosophila ... 58 1e-07
gb|AAG44573.1|AF251241_1 period [Drosophila melanogaster] 58 1e-07
>ref|NP_188267.1| putative lectin; protein id: At3g16460.1 [Arabidopsis thaliana]
gi|22330081|ref|NP_683404.1| similar to putative lectin;
protein id: At1g45258.1, supported by cDNA: gi_14334869
[Arabidopsis thaliana] gi|2062157|gb|AAB63631.1|
jasmonate inducible protein isolog [Arabidopsis
thaliana] gi|9279645|dbj|BAB01145.1| jasmonate inducible
protein; myrosinase binding protein-like [Arabidopsis
thaliana] gi|14334870|gb|AAK59613.1| putative lectin
protein [Arabidopsis thaliana]
gi|24030509|gb|AAN41400.1| putative lectin protein
[Arabidopsis thaliana]
Length = 705
Score = 61.6 bits (148), Expect = 1e-08
Identities = 34/81 (41%), Positives = 42/81 (50%), Gaps = 9/81 (11%)
Frame = -2
Query: 685 TSTTPQQGSGTGIGT---------GIGTGTGTNGGVVYTGPDTGLGNSVPGTGSGLGSGS 533
T T G+GTG GT G GTGTGT G TG TG G GTG+G G+G+
Sbjct: 189 TGTGTGTGTGTGTGTGTGTGTGTGGTGTGTGTGGTGTGTGTGTGTGTGTGGTGTGTGTGT 248
Query: 532 GSGGETMLADGSYLAGLAMGD 470
GSG + + A G+ G + D
Sbjct: 249 GSGAQKLEAQGNSTGGTSWDD 269
Score = 59.3 bits (142), Expect = 5e-08
Identities = 34/78 (43%), Positives = 40/78 (50%), Gaps = 7/78 (8%)
Frame = -2
Query: 685 TSTTPQQGSGTGIGTGIGTGTGTNG-------GVVYTGPDTGLGNSVPGTGSGLGSGSGS 527
T T G+GTG GTG GTGTGT G G TG TG G + GTG+G G+G+G+
Sbjct: 144 TGTGTGTGTGTGTGTGTGTGTGTGGTGTGTGTGTGGTGTGTGTGGTGTGTGTGTGTGTGT 203
Query: 526 GGETMLADGSYLAGLAMG 473
G T G G G
Sbjct: 204 GTGTGTGTGGTGTGTGTG 221
Score = 56.6 bits (135), Expect = 3e-07
Identities = 29/55 (52%), Positives = 33/55 (59%)
Frame = -2
Query: 685 TSTTPQQGSGTGIGTGIGTGTGTNGGVVYTGPDTGLGNSVPGTGSGLGSGSGSGG 521
T T G+GTG GTG GTGTGT G TG TG G GTG+G G+G+G G
Sbjct: 130 TGGTGTGGTGTGTGTGTGTGTGTGTG---TGTGTGTGTGTGGTGTGTGTGTGGTG 181
Score = 55.5 bits (132), Expect = 7e-07
Identities = 30/64 (46%), Positives = 36/64 (55%), Gaps = 1/64 (1%)
Frame = -2
Query: 685 TSTTPQQGSGTGIGTGIGTGTGTNGGVVYTGPDTGLGNSVPGTGSGLGS-GSGSGGETML 509
T T G+GTG GTG GTGTGT G G TG G GTG+G G+ G+G+G T
Sbjct: 138 TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGTGTGTGTGTGGTGTGTGTGGTGTGTGTGT 197
Query: 508 ADGS 497
G+
Sbjct: 198 GTGT 201
Score = 48.9 bits (115), Expect = 7e-05
Identities = 30/81 (37%), Positives = 36/81 (44%), Gaps = 26/81 (32%)
Frame = -2
Query: 685 TSTTPQQGSGTGIGTGIGTGTGTNGGVVYTGPDTGLGNSVPGTGSG-------------- 548
T T G+GTG GTG GTGTGT G TG TG G + GTG+G
Sbjct: 142 TGTGTGTGTGTGTGTGTGTGTGTGTGGTGTGTGTGTGGTGTGTGTGGTGTGTGTGTGTGT 201
Query: 547 ------------LGSGSGSGG 521
G+G+G+GG
Sbjct: 202 GTGTGTGTGTGGTGTGTGTGG 222
Score = 34.7 bits (78), Expect = 1.3
Identities = 25/75 (33%), Positives = 31/75 (41%)
Frame = -2
Query: 682 STTPQQGSGTGIGTGIGTGTGTNGGVVYTGPDTGLGNSVPGTGSGLGSGSGSGGETMLAD 503
S P G+GTG GTGTGT GTG+G G+G+G+G T
Sbjct: 126 SPIPTGGTGTG-----GTGTGT------------------GTGTGTGTGTGTGTGTGTGT 162
Query: 502 GSYLAGLAMGDSPRT 458
G+ G G T
Sbjct: 163 GTGTGGTGTGTGTGT 177
>ref|NP_032862.1| per-hexamer repeat gene 5 [Mus musculus]
gi|2507093|sp|P08399|PHX5_MOUSE Per-hexamer repeat
protein 5 gi|1196649|gb|AAA88320.1| ORF starts at 87,
first start codon is found at 210.; putative
Length = 672
Score = 59.7 bits (143), Expect = 4e-08
Identities = 40/95 (42%), Positives = 46/95 (48%), Gaps = 14/95 (14%)
Frame = -2
Query: 688 VTSTTPQQGSGTGIGTGIGTGTGTNGG-----VVYTGPDTGLGNSV---------PGTGS 551
VT T +G+GTG GTG GTGTGT G V TG TG G GTG+
Sbjct: 268 VTGTGTDRGTGTGTGTGTGTGTGTGTGTGTAKVTGTGTGTGTGTGTGTGTGTGTGTGTGT 327
Query: 550 GLGSGSGSGGETMLADGSYLAGLAMGDSPRTALIS 446
G GSGSG+G T GS G G TA ++
Sbjct: 328 GTGSGSGTGTGTGTGSGSG-TGTGTGSGSGTAKVT 361
Score = 58.2 bits (139), Expect = 1e-07
Identities = 35/63 (55%), Positives = 39/63 (61%)
Frame = -2
Query: 685 TSTTPQQGSGTGIGTGIGTGTGTNGGVVYTGPDTGLGNSVPGTGSGLGSGSGSGGETMLA 506
T T + +GTG GTG GTGTGT G TG TG G S G+GSG GSGSG+G T L
Sbjct: 477 TDTGTAKVTGTGTGTGTGTGTGTGTG---TGTGTGTG-SGSGSGSGSGSGSGTGTGTGLG 532
Query: 505 DGS 497
GS
Sbjct: 533 SGS 535
Score = 57.4 bits (137), Expect = 2e-07
Identities = 32/55 (58%), Positives = 35/55 (63%)
Frame = -2
Query: 688 VTSTTPQQGSGTGIGTGIGTGTGTNGGVVYTGPDTGLGNSVPGTGSGLGSGSGSG 524
VT T G+GTG GTG GTGTGT G TG TG G GTG+G G+GSGSG
Sbjct: 422 VTGTGTGTGTGTGTGTGTGTGTGTGTG---TGTGTGTGT---GTGTGTGTGSGSG 470
Score = 56.6 bits (135), Expect = 3e-07
Identities = 32/65 (49%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Frame = -2
Query: 688 VTSTTPQQGSGTGIGTGIGTGTGT-NGGVVYTGPDTGLGNSVPGTGSGLGSGSGSGGETM 512
VT T G+GTG GTG GTGTGT V TG D G G GTG+G G+G+G+G T
Sbjct: 240 VTGTGTGTGTGTGTGTGTGTGTGTGTAKVTGTGTDRGTGTGT-GTGTGTGTGTGTGTGTA 298
Query: 511 LADGS 497
G+
Sbjct: 299 KVTGT 303
Score = 56.6 bits (135), Expect = 3e-07
Identities = 33/71 (46%), Positives = 39/71 (54%), Gaps = 7/71 (9%)
Frame = -2
Query: 688 VTSTTPQQGSGTGIGTGIGTGTGTNGG-------VVYTGPDTGLGNSVPGTGSGLGSGSG 530
VT T G+GTG GTG GTGTGT G V TG D G G GTG+G G+G+G
Sbjct: 132 VTGTAKVTGTGTGTGTGTGTGTGTGTGTGTGTAKVTGTGTDRGTGT---GTGTGTGTGTG 188
Query: 529 SGGETMLADGS 497
+G T G+
Sbjct: 189 TGTGTAKVTGT 199
Score = 56.2 bits (134), Expect = 4e-07
Identities = 34/73 (46%), Positives = 40/73 (54%), Gaps = 5/73 (6%)
Frame = -2
Query: 700 DANPVTSTTPQQGSGTGIGTGIGTGTGTNGGVVYTGPDTGLGN-----SVPGTGSGLGSG 536
D T G+GTG GTG GTGTGT G TG +G G+ S GTG+GLGSG
Sbjct: 478 DTGTAKVTGTGTGTGTGTGTGTGTGTGTGTG---TGSGSGSGSGSGSGSGTGTGTGLGSG 534
Query: 535 SGSGGETMLADGS 497
SGSG + G+
Sbjct: 535 SGSGTAKVTGTGT 547
Score = 55.8 bits (133), Expect = 6e-07
Identities = 32/68 (47%), Positives = 37/68 (54%)
Frame = -2
Query: 700 DANPVTSTTPQQGSGTGIGTGIGTGTGTNGGVVYTGPDTGLGNSVPGTGSGLGSGSGSGG 521
D T G+GTG GTG GTGTGT G TG TG G GTG+G G+G+GSG
Sbjct: 416 DTGTAKVTGTGTGTGTGTGTGTGTGTGTGTG---TGTGTGTGT---GTGTGTGTGTGSGS 469
Query: 520 ETMLADGS 497
T G+
Sbjct: 470 GTAKVTGT 477
Score = 55.5 bits (132), Expect = 7e-07
Identities = 32/64 (50%), Positives = 38/64 (59%), Gaps = 6/64 (9%)
Frame = -2
Query: 688 VTSTTPQQGSGTGIGTGIGTGTGTNGG---VVYTGPDTGLGN---SVPGTGSGLGSGSGS 527
VT T +G+GTG GTG GTGTGT G V T TG G V GTG+G G+G+G+
Sbjct: 166 VTGTGTDRGTGTGTGTGTGTGTGTGTGTAKVTGTAKVTGTGTGTAKVTGTGTGTGTGTGT 225
Query: 526 GGET 515
G T
Sbjct: 226 GTGT 229
Score = 55.5 bits (132), Expect = 7e-07
Identities = 40/104 (38%), Positives = 45/104 (42%), Gaps = 24/104 (23%)
Frame = -2
Query: 685 TSTTPQQGSGTGIGTGIGTGTGTNGG---------------VVYTGPDTGLGNSV----- 566
T T G+GTG GTG GTGTGT G V TG TG G
Sbjct: 443 TGTGTGTGTGTGTGTGTGTGTGTGSGSGTAKVTGTDTGTAKVTGTGTGTGTGTGTGTGTG 502
Query: 565 ----PGTGSGLGSGSGSGGETMLADGSYLAGLAMGDSPRTALIS 446
GTGSG GSGSGSG + G+ GL G TA ++
Sbjct: 503 TGTGTGTGSGSGSGSGSGSGSGTGTGT---GLGSGSGSGTAKVT 543
Score = 55.1 bits (131), Expect = 1e-06
Identities = 31/64 (48%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Frame = -2
Query: 685 TSTTPQQGSGTGIGTGIGTGTGTNGGVVYTGPDTGLGNS-VPGTGSGLGSGSGSGGETML 509
T T + +GTG GTG GTGTGT TG DTG G + V GTG+G G+G+G+G T
Sbjct: 205 TGTGTAKVTGTGTGTGTGTGTGTG-----TGTDTGTGTAKVTGTGTGTGTGTGTGTGTGT 259
Query: 508 ADGS 497
G+
Sbjct: 260 GTGT 263
Score = 54.7 bits (130), Expect = 1e-06
Identities = 31/66 (46%), Positives = 40/66 (59%), Gaps = 3/66 (4%)
Frame = -2
Query: 685 TSTTPQQGSGTGIGTGIGTGTGTNGGVVYTGPDTGLGN---SVPGTGSGLGSGSGSGGET 515
T T G+GTG GTG G+G+G+ G +G +G G+ S GTG+GLGSGSGSG T
Sbjct: 545 TGTAKVTGTGTGTGTGTGSGSGSGSG---SGSGSGSGSGSGSGTGTGTGLGSGSGSGSGT 601
Query: 514 MLADGS 497
G+
Sbjct: 602 GTGTGT 607
Score = 53.5 bits (127), Expect = 3e-06
Identities = 31/64 (48%), Positives = 37/64 (57%)
Frame = -2
Query: 688 VTSTTPQQGSGTGIGTGIGTGTGTNGGVVYTGPDTGLGNSVPGTGSGLGSGSGSGGETML 509
VT T G+GTG GTG GT TGT G TG TG G GTG+G G+G+G+G T
Sbjct: 212 VTGTGTGTGTGTGTGTGTGTDTGT-GTAKVTGTGTGTGT---GTGTGTGTGTGTGTGTAK 267
Query: 508 ADGS 497
G+
Sbjct: 268 VTGT 271
Score = 52.8 bits (125), Expect = 5e-06
Identities = 31/63 (49%), Positives = 36/63 (56%), Gaps = 7/63 (11%)
Frame = -2
Query: 664 GSGTGIGTGIGTGTGT-------NGGVVYTGPDTGLGNSVPGTGSGLGSGSGSGGETMLA 506
GSGTG GTG+G+G+G+ G TG TG G GTGSG GSGSGSG +
Sbjct: 522 GSGTGTGTGLGSGSGSGTAKVTGTGTAKVTGTGTGTGT---GTGSGSGSGSGSGSGSGSG 578
Query: 505 DGS 497
GS
Sbjct: 579 SGS 581
Score = 52.4 bits (124), Expect = 6e-06
Identities = 31/73 (42%), Positives = 38/73 (51%), Gaps = 10/73 (13%)
Frame = -2
Query: 685 TSTTPQQGSGTGIGTGIGTGTGT-------NGGVVYTGPDTGLGNSV---PGTGSGLGSG 536
T T GSGTG GTG G+G+GT +G TG TG G GTG+G G+G
Sbjct: 325 TGTGTGSGSGTGTGTGTGSGSGTGTGTGSGSGTAKVTGTATGTGTGTDTGTGTGTGTGTG 384
Query: 535 SGSGGETMLADGS 497
+GSG T G+
Sbjct: 385 TGSGSGTAKVTGT 397
Score = 50.4 bits (119), Expect = 2e-05
Identities = 29/64 (45%), Positives = 36/64 (55%), Gaps = 8/64 (12%)
Frame = -2
Query: 664 GSGTGIGTGIGTGTGTNGG-----VVYTGPDTGLGNSV---PGTGSGLGSGSGSGGETML 509
GSGTG GTG GTGTGT G V G TG + GTG+G G+G+G+G T
Sbjct: 598 GSGTGTGTGTGTGTGTGTGTGTSTVTVRGTGTGTATATGTGTGTGTGTGTGTGTGTGTDT 657
Query: 508 ADGS 497
+ G+
Sbjct: 658 STGT 661
Score = 49.7 bits (117), Expect = 4e-05
Identities = 30/66 (45%), Positives = 37/66 (55%), Gaps = 3/66 (4%)
Frame = -2
Query: 685 TSTTPQQGSGTGIGTGIGTGTGTNGGVVYTGPDTGLGNS---VPGTGSGLGSGSGSGGET 515
T T GSG+G G+G GTGTGT G TG TG G S V GTG+G + +G+G T
Sbjct: 585 TGTGTGLGSGSGSGSGTGTGTGTGTG---TGTGTGTGTSTVTVRGTGTGTATATGTGTGT 641
Query: 514 MLADGS 497
G+
Sbjct: 642 GTGTGT 647
Score = 49.7 bits (117), Expect = 4e-05
Identities = 31/63 (49%), Positives = 37/63 (58%)
Frame = -2
Query: 685 TSTTPQQGSGTGIGTGIGTGTGTNGGVVYTGPDTGLGNSVPGTGSGLGSGSGSGGETMLA 506
+ T G+GT TG GTGTGT G +G +G G S G+GSG GSGSG+G T L
Sbjct: 537 SGTAKVTGTGTAKVTGTGTGTGTGTG---SGSGSGSG-SGSGSGSGSGSGSGTGTGTGLG 592
Query: 505 DGS 497
GS
Sbjct: 593 SGS 595
Score = 47.8 bits (112), Expect = 2e-04
Identities = 32/87 (36%), Positives = 38/87 (42%), Gaps = 23/87 (26%)
Frame = -2
Query: 688 VTSTTPQQGSGTGIGTGIGTGTGT-----------------------NGGVVYTGPDTGL 578
VT T G+GT GTG GTGTGT G TG DTG
Sbjct: 360 VTGTATGTGTGTDTGTGTGTGTGTGTGSGSGTAKVTGTATTTATVTETGTAKVTGTDTGT 419
Query: 577 GNSVPGTGSGLGSGSGSGGETMLADGS 497
V GTG+G G+G+G+G T G+
Sbjct: 420 A-KVTGTGTGTGTGTGTGTGTGTGTGT 445
Score = 47.0 bits (110), Expect = 3e-04
Identities = 29/69 (42%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Frame = -2
Query: 700 DANPVTSTTPQQGSGTGIGTGIGTGTGTNGGVVYTGPDTGLGNS-VPGTGSGLGSGSGSG 524
D T T G+ GTG GTGTGT G TG TG G + V GTG+ G+G+G+G
Sbjct: 122 DTGTGTGTAKVTGTAKVTGTGTGTGTGTGTG-TGTGTGTGTGTAKVTGTGTDRGTGTGTG 180
Query: 523 GETMLADGS 497
T G+
Sbjct: 181 TGTGTGTGT 189
Score = 45.1 bits (105), Expect = 0.001
Identities = 25/49 (51%), Positives = 28/49 (57%)
Frame = -2
Query: 685 TSTTPQQGSGTGIGTGIGTGTGTNGGVVYTGPDTGLGNSVPGTGSGLGS 539
T T G+GTG GTG GTGTGT TG DT G GTG+G G+
Sbjct: 629 TGTATATGTGTGTGTGTGTGTGTG-----TGTDTSTGTD-RGTGTGTGT 671
Score = 41.6 bits (96), Expect = 0.011
Identities = 26/64 (40%), Positives = 34/64 (52%)
Frame = -2
Query: 688 VTSTTPQQGSGTGIGTGIGTGTGTNGGVVYTGPDTGLGNSVPGTGSGLGSGSGSGGETML 509
VT T + + TG GTG TGT V TG TG G GTG+G G+G+G+G +
Sbjct: 112 VTETGTAKVTDTGTGTGTAKVTGT-AKVTGTGTGTGTGT---GTGTGTGTGTGTGTAKVT 167
Query: 508 ADGS 497
G+
Sbjct: 168 GTGT 171
Score = 38.1 bits (87), Expect = 0.12
Identities = 25/57 (43%), Positives = 30/57 (51%)
Frame = -2
Query: 685 TSTTPQQGSGTGIGTGIGTGTGTNGGVVYTGPDTGLGNSVPGTGSGLGSGSGSGGET 515
T T +GT T GTGTGT V T TG G GTG+G G+G+G+G T
Sbjct: 107 TGTATVTETGTAKVTDTGTGTGT-AKVTGTAKVTGTGT---GTGTGTGTGTGTGTGT 159
Score = 32.3 bits (72), Expect = 6.7
Identities = 24/69 (34%), Positives = 34/69 (48%), Gaps = 6/69 (8%)
Frame = -2
Query: 685 TSTTPQQGSGTGIGTGIGTGTGTNGGVVY-----TGPDTGLGN-SVPGTGSGLGSGSGSG 524
T+ T + + TG TGI TGT T G V TG DT G + T + +G+G+G
Sbjct: 49 TAYTEVRKTTTGTATGIATGTCTGTGRVKATGRGTGTDTDTGTVTARATVTARVTGTGTG 108
Query: 523 GETMLADGS 497
T+ G+
Sbjct: 109 TATVTETGT 117
>pir||UMMS period clock protein - mouse (fragment) gi|1334150|emb|CAA26710.1|
unidentified reading frame (first ATG at pos. 210) [Mus
musculus] gi|224719|prf||1111288A gene cp2.2
Length = 713
Score = 59.7 bits (143), Expect = 4e-08
Identities = 40/95 (42%), Positives = 46/95 (48%), Gaps = 14/95 (14%)
Frame = -2
Query: 688 VTSTTPQQGSGTGIGTGIGTGTGTNGG-----VVYTGPDTGLGNSV---------PGTGS 551
VT T +G+GTG GTG GTGTGT G V TG TG G GTG+
Sbjct: 309 VTGTGTDRGTGTGTGTGTGTGTGTGTGTGTAKVTGTGTGTGTGTGTGTGTGTGTGTGTGT 368
Query: 550 GLGSGSGSGGETMLADGSYLAGLAMGDSPRTALIS 446
G GSGSG+G T GS G G TA ++
Sbjct: 369 GTGSGSGTGTGTGTGSGSG-TGTGTGSGSGTAKVT 402
Score = 58.2 bits (139), Expect = 1e-07
Identities = 35/63 (55%), Positives = 39/63 (61%)
Frame = -2
Query: 685 TSTTPQQGSGTGIGTGIGTGTGTNGGVVYTGPDTGLGNSVPGTGSGLGSGSGSGGETMLA 506
T T + +GTG GTG GTGTGT G TG TG G S G+GSG GSGSG+G T L
Sbjct: 518 TDTGTAKVTGTGTGTGTGTGTGTGTG---TGTGTGTG-SGSGSGSGSGSGSGTGTGTGLG 573
Query: 505 DGS 497
GS
Sbjct: 574 SGS 576
Score = 57.4 bits (137), Expect = 2e-07
Identities = 32/55 (58%), Positives = 35/55 (63%)
Frame = -2
Query: 688 VTSTTPQQGSGTGIGTGIGTGTGTNGGVVYTGPDTGLGNSVPGTGSGLGSGSGSG 524
VT T G+GTG GTG GTGTGT G TG TG G GTG+G G+GSGSG
Sbjct: 463 VTGTGTGTGTGTGTGTGTGTGTGTGTG---TGTGTGTGT---GTGTGTGTGSGSG 511
Score = 56.6 bits (135), Expect = 3e-07
Identities = 32/65 (49%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Frame = -2
Query: 688 VTSTTPQQGSGTGIGTGIGTGTGT-NGGVVYTGPDTGLGNSVPGTGSGLGSGSGSGGETM 512
VT T G+GTG GTG GTGTGT V TG D G G GTG+G G+G+G+G T
Sbjct: 281 VTGTGTGTGTGTGTGTGTGTGTGTGTAKVTGTGTDRGTGTGT-GTGTGTGTGTGTGTGTA 339
Query: 511 LADGS 497
G+
Sbjct: 340 KVTGT 344
Score = 56.6 bits (135), Expect = 3e-07
Identities = 33/71 (46%), Positives = 39/71 (54%), Gaps = 7/71 (9%)
Frame = -2
Query: 688 VTSTTPQQGSGTGIGTGIGTGTGTNGG-------VVYTGPDTGLGNSVPGTGSGLGSGSG 530
VT T G+GTG GTG GTGTGT G V TG D G G GTG+G G+G+G
Sbjct: 173 VTGTAKVTGTGTGTGTGTGTGTGTGTGTGTGTAKVTGTGTDRGTGT---GTGTGTGTGTG 229
Query: 529 SGGETMLADGS 497
+G T G+
Sbjct: 230 TGTGTAKVTGT 240
Score = 56.2 bits (134), Expect = 4e-07
Identities = 34/73 (46%), Positives = 40/73 (54%), Gaps = 5/73 (6%)
Frame = -2
Query: 700 DANPVTSTTPQQGSGTGIGTGIGTGTGTNGGVVYTGPDTGLGN-----SVPGTGSGLGSG 536
D T G+GTG GTG GTGTGT G TG +G G+ S GTG+GLGSG
Sbjct: 519 DTGTAKVTGTGTGTGTGTGTGTGTGTGTGTG---TGSGSGSGSGSGSGSGTGTGTGLGSG 575
Query: 535 SGSGGETMLADGS 497
SGSG + G+
Sbjct: 576 SGSGTAKVTGTGT 588
Score = 55.8 bits (133), Expect = 6e-07
Identities = 32/68 (47%), Positives = 37/68 (54%)
Frame = -2
Query: 700 DANPVTSTTPQQGSGTGIGTGIGTGTGTNGGVVYTGPDTGLGNSVPGTGSGLGSGSGSGG 521
D T G+GTG GTG GTGTGT G TG TG G GTG+G G+G+GSG
Sbjct: 457 DTGTAKVTGTGTGTGTGTGTGTGTGTGTGTG---TGTGTGTGT---GTGTGTGTGTGSGS 510
Query: 520 ETMLADGS 497
T G+
Sbjct: 511 GTAKVTGT 518
Score = 55.5 bits (132), Expect = 7e-07
Identities = 32/64 (50%), Positives = 38/64 (59%), Gaps = 6/64 (9%)
Frame = -2
Query: 688 VTSTTPQQGSGTGIGTGIGTGTGTNGG---VVYTGPDTGLGN---SVPGTGSGLGSGSGS 527
VT T +G+GTG GTG GTGTGT G V T TG G V GTG+G G+G+G+
Sbjct: 207 VTGTGTDRGTGTGTGTGTGTGTGTGTGTAKVTGTAKVTGTGTGTAKVTGTGTGTGTGTGT 266
Query: 526 GGET 515
G T
Sbjct: 267 GTGT 270
Score = 55.5 bits (132), Expect = 7e-07
Identities = 40/104 (38%), Positives = 45/104 (42%), Gaps = 24/104 (23%)
Frame = -2
Query: 685 TSTTPQQGSGTGIGTGIGTGTGTNGG---------------VVYTGPDTGLGNSV----- 566
T T G+GTG GTG GTGTGT G V TG TG G
Sbjct: 484 TGTGTGTGTGTGTGTGTGTGTGTGSGSGTAKVTGTDTGTAKVTGTGTGTGTGTGTGTGTG 543
Query: 565 ----PGTGSGLGSGSGSGGETMLADGSYLAGLAMGDSPRTALIS 446
GTGSG GSGSGSG + G+ GL G TA ++
Sbjct: 544 TGTGTGTGSGSGSGSGSGSGSGTGTGT---GLGSGSGSGTAKVT 584
Score = 55.1 bits (131), Expect = 1e-06
Identities = 31/64 (48%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Frame = -2
Query: 685 TSTTPQQGSGTGIGTGIGTGTGTNGGVVYTGPDTGLGNS-VPGTGSGLGSGSGSGGETML 509
T T + +GTG GTG GTGTGT TG DTG G + V GTG+G G+G+G+G T
Sbjct: 246 TGTGTAKVTGTGTGTGTGTGTGTG-----TGTDTGTGTAKVTGTGTGTGTGTGTGTGTGT 300
Query: 508 ADGS 497
G+
Sbjct: 301 GTGT 304
Score = 54.7 bits (130), Expect = 1e-06
Identities = 31/66 (46%), Positives = 40/66 (59%), Gaps = 3/66 (4%)
Frame = -2
Query: 685 TSTTPQQGSGTGIGTGIGTGTGTNGGVVYTGPDTGLGN---SVPGTGSGLGSGSGSGGET 515
T T G+GTG GTG G+G+G+ G +G +G G+ S GTG+GLGSGSGSG T
Sbjct: 586 TGTAKVTGTGTGTGTGTGSGSGSGSG---SGSGSGSGSGSGSGTGTGTGLGSGSGSGSGT 642
Query: 514 MLADGS 497
G+
Sbjct: 643 GTGTGT 648
Score = 53.5 bits (127), Expect = 3e-06
Identities = 31/64 (48%), Positives = 37/64 (57%)
Frame = -2
Query: 688 VTSTTPQQGSGTGIGTGIGTGTGTNGGVVYTGPDTGLGNSVPGTGSGLGSGSGSGGETML 509
VT T G+GTG GTG GT TGT G TG TG G GTG+G G+G+G+G T
Sbjct: 253 VTGTGTGTGTGTGTGTGTGTDTGT-GTAKVTGTGTGTGT---GTGTGTGTGTGTGTGTAK 308
Query: 508 ADGS 497
G+
Sbjct: 309 VTGT 312
Score = 52.8 bits (125), Expect = 5e-06
Identities = 31/63 (49%), Positives = 36/63 (56%), Gaps = 7/63 (11%)
Frame = -2
Query: 664 GSGTGIGTGIGTGTGT-------NGGVVYTGPDTGLGNSVPGTGSGLGSGSGSGGETMLA 506
GSGTG GTG+G+G+G+ G TG TG G GTGSG GSGSGSG +
Sbjct: 563 GSGTGTGTGLGSGSGSGTAKVTGTGTAKVTGTGTGTGT---GTGSGSGSGSGSGSGSGSG 619
Query: 505 DGS 497
GS
Sbjct: 620 SGS 622
Score = 52.4 bits (124), Expect = 6e-06
Identities = 31/73 (42%), Positives = 38/73 (51%), Gaps = 10/73 (13%)
Frame = -2
Query: 685 TSTTPQQGSGTGIGTGIGTGTGT-------NGGVVYTGPDTGLGNSV---PGTGSGLGSG 536
T T GSGTG GTG G+G+GT +G TG TG G GTG+G G+G
Sbjct: 366 TGTGTGSGSGTGTGTGTGSGSGTGTGTGSGSGTAKVTGTATGTGTGTDTGTGTGTGTGTG 425
Query: 535 SGSGGETMLADGS 497
+GSG T G+
Sbjct: 426 TGSGSGTAKVTGT 438
Score = 50.4 bits (119), Expect = 2e-05
Identities = 29/64 (45%), Positives = 36/64 (55%), Gaps = 8/64 (12%)
Frame = -2
Query: 664 GSGTGIGTGIGTGTGTNGG-----VVYTGPDTGLGNSV---PGTGSGLGSGSGSGGETML 509
GSGTG GTG GTGTGT G V G TG + GTG+G G+G+G+G T
Sbjct: 639 GSGTGTGTGTGTGTGTGTGTGTSTVTVRGTGTGTATATGTGTGTGTGTGTGTGTGTGTDT 698
Query: 508 ADGS 497
+ G+
Sbjct: 699 STGT 702
Score = 49.7 bits (117), Expect = 4e-05
Identities = 30/66 (45%), Positives = 37/66 (55%), Gaps = 3/66 (4%)
Frame = -2
Query: 685 TSTTPQQGSGTGIGTGIGTGTGTNGGVVYTGPDTGLGNS---VPGTGSGLGSGSGSGGET 515
T T GSG+G G+G GTGTGT G TG TG G S V GTG+G + +G+G T
Sbjct: 626 TGTGTGLGSGSGSGSGTGTGTGTGTG---TGTGTGTGTSTVTVRGTGTGTATATGTGTGT 682
Query: 514 MLADGS 497
G+
Sbjct: 683 GTGTGT 688
Score = 49.7 bits (117), Expect = 4e-05
Identities = 31/63 (49%), Positives = 37/63 (58%)
Frame = -2
Query: 685 TSTTPQQGSGTGIGTGIGTGTGTNGGVVYTGPDTGLGNSVPGTGSGLGSGSGSGGETMLA 506
+ T G+GT TG GTGTGT G +G +G G S G+GSG GSGSG+G T L
Sbjct: 578 SGTAKVTGTGTAKVTGTGTGTGTGTG---SGSGSGSG-SGSGSGSGSGSGSGTGTGTGLG 633
Query: 505 DGS 497
GS
Sbjct: 634 SGS 636
Score = 47.8 bits (112), Expect = 2e-04
Identities = 32/87 (36%), Positives = 38/87 (42%), Gaps = 23/87 (26%)
Frame = -2
Query: 688 VTSTTPQQGSGTGIGTGIGTGTGT-----------------------NGGVVYTGPDTGL 578
VT T G+GT GTG GTGTGT G TG DTG
Sbjct: 401 VTGTATGTGTGTDTGTGTGTGTGTGTGSGSGTAKVTGTATTTATVTETGTAKVTGTDTGT 460
Query: 577 GNSVPGTGSGLGSGSGSGGETMLADGS 497
V GTG+G G+G+G+G T G+
Sbjct: 461 A-KVTGTGTGTGTGTGTGTGTGTGTGT 486
Score = 47.0 bits (110), Expect = 3e-04
Identities = 29/69 (42%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Frame = -2
Query: 700 DANPVTSTTPQQGSGTGIGTGIGTGTGTNGGVVYTGPDTGLGNS-VPGTGSGLGSGSGSG 524
D T T G+ GTG GTGTGT G TG TG G + V GTG+ G+G+G+G
Sbjct: 163 DTGTGTGTAKVTGTAKVTGTGTGTGTGTGTG-TGTGTGTGTGTAKVTGTGTDRGTGTGTG 221
Query: 523 GETMLADGS 497
T G+
Sbjct: 222 TGTGTGTGT 230
Score = 45.1 bits (105), Expect = 0.001
Identities = 25/49 (51%), Positives = 28/49 (57%)
Frame = -2
Query: 685 TSTTPQQGSGTGIGTGIGTGTGTNGGVVYTGPDTGLGNSVPGTGSGLGS 539
T T G+GTG GTG GTGTGT TG DT G GTG+G G+
Sbjct: 670 TGTATATGTGTGTGTGTGTGTGTG-----TGTDTSTGTD-RGTGTGTGT 712
Score = 41.6 bits (96), Expect = 0.011
Identities = 26/64 (40%), Positives = 34/64 (52%)
Frame = -2
Query: 688 VTSTTPQQGSGTGIGTGIGTGTGTNGGVVYTGPDTGLGNSVPGTGSGLGSGSGSGGETML 509
VT T + + TG GTG TGT V TG TG G GTG+G G+G+G+G +
Sbjct: 153 VTETGTAKVTDTGTGTGTAKVTGT-AKVTGTGTGTGTGT---GTGTGTGTGTGTGTAKVT 208
Query: 508 ADGS 497
G+
Sbjct: 209 GTGT 212
Score = 38.1 bits (87), Expect = 0.12
Identities = 25/57 (43%), Positives = 30/57 (51%)
Frame = -2
Query: 685 TSTTPQQGSGTGIGTGIGTGTGTNGGVVYTGPDTGLGNSVPGTGSGLGSGSGSGGET 515
T T +GT T GTGTGT V T TG G GTG+G G+G+G+G T
Sbjct: 148 TGTATVTETGTAKVTDTGTGTGT-AKVTGTAKVTGTGT---GTGTGTGTGTGTGTGT 200
Score = 32.3 bits (72), Expect = 6.7
Identities = 24/69 (34%), Positives = 34/69 (48%), Gaps = 6/69 (8%)
Frame = -2
Query: 685 TSTTPQQGSGTGIGTGIGTGTGTNGGVVY-----TGPDTGLGN-SVPGTGSGLGSGSGSG 524
T+ T + + TG TGI TGT T G V TG DT G + T + +G+G+G
Sbjct: 90 TAYTEVRKTTTGTATGIATGTCTGTGRVKATGRGTGTDTDTGTVTARATVTARVTGTGTG 149
Query: 523 GETMLADGS 497
T+ G+
Sbjct: 150 TATVTETGT 158
>pir||C26427 period clock protein type C - fruit fly (Drosophila melanogaster)
gi|158058|gb|AAA28753.1| biological clock protein C
gi|225488|prf||1304299C protein perC
Length = 1176
Score = 57.8 bits (138), Expect = 1e-07
Identities = 34/74 (45%), Positives = 42/74 (55%)
Frame = -2
Query: 688 VTSTTPQQGSGTGIGTGIGTGTGTNGGVVYTGPDTGLGNSVPGTGSGLGSGSGSGGETML 509
VT+T+ GTG GTG GTGTGT G TG TG G GTG+G G+G+G+G T
Sbjct: 687 VTNTSIAGTGGTGTGTGTGTGTGTGTG---TGTGTGTGTGT-GTGTGTGTGTGTGNGTNS 742
Query: 508 ADGSYLAGLAMGDS 467
G+ A + G S
Sbjct: 743 GTGTGTASSSKGGS 756
Score = 52.8 bits (125), Expect = 5e-06
Identities = 33/76 (43%), Positives = 39/76 (50%)
Frame = -2
Query: 685 TSTTPQQGSGTGIGTGIGTGTGTNGGVVYTGPDTGLGNSVPGTGSGLGSGSGSGGETMLA 506
TS G+GTG GTG GTGTGT G TG TG G GTG+G G+G+G+ T
Sbjct: 690 TSIAGTGGTGTGTGTGTGTGTGTGTGTG-TGTGTGTGTGT-GTGTGTGTGNGTNSGTGTG 747
Query: 505 DGSYLAGLAMGDSPRT 458
S G + P T
Sbjct: 748 TASSSKGGSAAIPPVT 763
Score = 32.7 bits (73), Expect = 5.1
Identities = 20/56 (35%), Positives = 27/56 (47%)
Frame = -2
Query: 664 GSGTGIGTGIGTGTGTNGGVVYTGPDTGLGNSVPGTGSGLGSGSGSGGETMLADGS 497
G G+G G G+ G G+ GV G G + GTG+ G+G G G A G+
Sbjct: 856 GVGSG-GAGVAGGGGSGTGVA--GTPEGRATTTSGTGTPGGAGGGGGAGAAAAAGA 908
>gb|AAG44573.1|AF251241_1 period [Drosophila melanogaster]
Length = 244
Score = 57.8 bits (138), Expect = 1e-07
Identities = 34/74 (45%), Positives = 42/74 (55%)
Frame = -2
Query: 688 VTSTTPQQGSGTGIGTGIGTGTGTNGGVVYTGPDTGLGNSVPGTGSGLGSGSGSGGETML 509
VT+T+ GTG GTG GTGTGT G TG TG G GTG+G G+G+G+G T
Sbjct: 5 VTNTSIAGTGGTGTGTGTGTGTGTGTG---TGTGTGTGTGT-GTGTGTGTGTGTGNGTNS 60
Query: 508 ADGSYLAGLAMGDS 467
G+ A + G S
Sbjct: 61 GTGTGTASSSKGGS 74
Score = 52.8 bits (125), Expect = 5e-06
Identities = 33/76 (43%), Positives = 39/76 (50%)
Frame = -2
Query: 685 TSTTPQQGSGTGIGTGIGTGTGTNGGVVYTGPDTGLGNSVPGTGSGLGSGSGSGGETMLA 506
TS G+GTG GTG GTGTGT G TG TG G GTG+G G+G+G+ T
Sbjct: 8 TSIAGTGGTGTGTGTGTGTGTGTGTGTG-TGTGTGTGTGT-GTGTGTGTGNGTNSGTGTG 65
Query: 505 DGSYLAGLAMGDSPRT 458
S G + P T
Sbjct: 66 TASSSKGGSAAIPPVT 81
Score = 32.7 bits (73), Expect = 5.1
Identities = 20/56 (35%), Positives = 27/56 (47%)
Frame = -2
Query: 664 GSGTGIGTGIGTGTGTNGGVVYTGPDTGLGNSVPGTGSGLGSGSGSGGETMLADGS 497
G G+G G G+ G G+ GV G G + GTG+ G+G G G A G+
Sbjct: 174 GVGSG-GAGVAGGGGSGTGVA--GTPEGRATTTSGTGTPGGAGGGGGAGAAAAAGA 226
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 676,500,294
Number of Sequences: 1393205
Number of extensions: 18063126
Number of successful extensions: 251109
Number of sequences better than 10.0: 4262
Number of HSP's better than 10.0 without gapping: 80959
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160135
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 32654539052
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
