Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004589A_C01 KMC004589A_c01
(657 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO45179.1| transcription factor Myb1 [Malus xiaojinensis] 46 5e-04
ref|NP_050062.1| NADH dehydrogenase subunit 2 [Pedinomonas minor... 35 1.2
ref|NP_179934.1| hypothetical protein; protein id: At2g23530.1 [... 32 7.5
>gb|AAO45179.1| transcription factor Myb1 [Malus xiaojinensis]
Length = 302
Score = 45.8 bits (107), Expect = 5e-04
Identities = 24/56 (42%), Positives = 37/56 (65%)
Frame = -3
Query: 634 SSSVSDISSNTSSIVDPPTLSLGLSLSSDQRQKSPRHTPLHAVPCFNNEDSIITVA 467
++++SD+ N +S D TL+L LSLS D R+ S RH+ + F+N DS+I+VA
Sbjct: 249 ATAISDL--NLNSTTDASTLTLNLSLSMDSREPSSRHSAFETMQGFSNGDSMISVA 302
>ref|NP_050062.1| NADH dehydrogenase subunit 2 [Pedinomonas minor]
gi|7520081|pir||T11319 NADH2 dehydrogenase (ubiquinone)
(EC 1.6.5.3) chain 2 - Pedinomonas minor mitochondrion
gi|4378773|gb|AAD19671.1| NADH dehydrogenase subunit 2
[Pedinomonas minor]
Length = 440
Score = 34.7 bits (78), Expect = 1.2
Identities = 27/95 (28%), Positives = 44/95 (45%)
Frame = -1
Query: 309 IVILASS*FLTLVFRRNRWPNLTLIFLLQRSCHVLVSLVYDMKFFFIGSFMFVVAENNEV 130
I +L + FL L F R+ + FLL L + +F +GSF F+ +
Sbjct: 8 INLLLINFFLPLAFLNKRFFYINFPFLLS-------ILYFAYIYFSVGSFDFLTVNSLWW 60
Query: 129 FFSC*LLIMLGMDYIPNFDFWNFFWEDRFSFAFLG 25
FF LI++G++ NF++W W +F +G
Sbjct: 61 FF----LILMGLNVNTNFNYWE--WWLTLTFVLIG 89
>ref|NP_179934.1| hypothetical protein; protein id: At2g23530.1 [Arabidopsis
thaliana] gi|7486166|pir||T01142 hypothetical protein
At2g23530 [imported] - Arabidopsis thaliana
gi|3242716|gb|AAC23768.1| hypothetical protein
[Arabidopsis thaliana]
Length = 555
Score = 32.0 bits (71), Expect = 7.5
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = +3
Query: 18 NIDQEKQKKTCPPKRSSRNQNSVYSPYPTLLATNKKRKL 134
N+ ++ + KT P KRS N+NSV +P P L + + +L
Sbjct: 50 NLSRKLKPKTRPVKRSYGNRNSVQNPTPPLQPSRRSSRL 88
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 561,792,712
Number of Sequences: 1393205
Number of extensions: 11875073
Number of successful extensions: 42344
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 41063
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42332
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28006887348
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
