Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004588A_C01 KMC004588A_c01
(388 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_326215.1| unknown; predicted coding region [Mycoplasma pu... 36 0.10
gb|EAA19592.1| hypothetical protein [Plasmodium yoelii yoelii] 35 0.30
prf||1110236B ORF 32 1.9
gb|EAA17152.1| Plasmodium falciparum CPW-WPC domain, putative [P... 32 1.9
ref|XP_149431.1| hypothetical protein XP_149431 [Mus musculus] 31 3.3
>ref|NP_326215.1| unknown; predicted coding region [Mycoplasma pulmonis]
gi|25394127|pir||H90559 hypothetical protein MYPU_3840
[imported] - Mycoplasma pulmonis (strain UAB CTIP)
gi|14089798|emb|CAC13557.1| unknown; predicted coding
region [Mycoplasma pulmonis]
Length = 370
Score = 36.2 bits (82), Expect = 0.10
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Frame = +1
Query: 34 LRIHFHTQILGHSVNTTKHQNHIYIIIPNT*LIITTLTSTA-TKITFFNTRIKTHLIHFY 210
L I F +I+ VN K Q + +I + L+++T TS +KIT ++KT + Y
Sbjct: 215 LTIFFQLKII---VNIVKIQIETFALIIFSPLVVSTATSNDYSKITILKQKLKTKIFSIY 271
Query: 211 FVCFQYFYPKNVTDTSIHS 267
F+ F K ++D I +
Sbjct: 272 FILFALSMSKFISDRLIET 290
>gb|EAA19592.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 528
Score = 34.7 bits (78), Expect = 0.30
Identities = 17/45 (37%), Positives = 25/45 (54%), Gaps = 11/45 (24%)
Frame = +3
Query: 69 FCKHNKTSKSYIHHHS*Y-----------LINNYNFDVNGHQNYI 170
FCKH KT +S I+ + L+++Y+FD+N H NYI
Sbjct: 454 FCKHKKTDQSLINQKNIIFKNFIILPCHILLSSYHFDMNNHLNYI 498
>prf||1110236B ORF
Length = 214
Score = 32.0 bits (71), Expect = 1.9
Identities = 21/57 (36%), Positives = 31/57 (53%)
Frame = +2
Query: 203 IFILYVFNIFTQKM*PTPQSIQTVGLD*VLLLMRRRCGAEVRPQLILPNLKRATAPP 373
I IL V IF M S++ + L+ ++ ++RRCG +RP L LPN+ PP
Sbjct: 150 IQILCVVAIFMWLMFYITLSLEPIALNCTIVSVKRRCGCWLRP-LQLPNMAVVHFPP 205
>gb|EAA17152.1| Plasmodium falciparum CPW-WPC domain, putative [Plasmodium yoelii
yoelii]
Length = 527
Score = 32.0 bits (71), Expect = 1.9
Identities = 23/71 (32%), Positives = 32/71 (44%), Gaps = 1/71 (1%)
Frame = +3
Query: 93 KSYIHHHS*YLINNYNFDVNGHQNYIF*HKN*NTFNPF-LFCMFSIFLPKKCDRHLNPFK 269
KS+I + + N++ N +NYIF +KN F C S KKC R +
Sbjct: 383 KSWIIFNENECAPSKNYNGNCKENYIFKNKNIEEKKSFEKLCNVSYPCLKKCQRDYSYNC 442
Query: 270 QLGWTEFCSSC 302
+GW E S C
Sbjct: 443 PMGWKETLSFC 453
>ref|XP_149431.1| hypothetical protein XP_149431 [Mus musculus]
Length = 122
Score = 31.2 bits (69), Expect = 3.3
Identities = 16/63 (25%), Positives = 29/63 (45%)
Frame = +1
Query: 7 KENSNIHLVLRIHFHTQILGHSVNTTKHQNHIYIIIPNT*LIITTLTSTATKITFFNTRI 186
+ +++ H + H HT + HS + T+ H Y +T L +T + IT+ T +
Sbjct: 46 QSHAHAHTYTQSHTHTHLYTHSYSHTQSHTHTYTHHTHTHLYTHIVTHSPDTITYTLTHL 105
Query: 187 KTH 195
H
Sbjct: 106 YIH 108
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 350,039,064
Number of Sequences: 1393205
Number of extensions: 7112539
Number of successful extensions: 22237
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 20034
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22075
length of database: 448,689,247
effective HSP length: 104
effective length of database: 303,795,927
effective search space used: 7291102248
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
