Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004587A_C01 KMC004587A_c01
(749 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_172388.1| putative protein phosphatase 2C; protein id: At... 89 7e-17
ref|NP_177008.1| putative protein phosphatase; protein id: At1g6... 86 4e-16
dbj|BAB32964.1| P0504D03.12 [Oryza sativa (japonica cultivar-gro... 84 3e-15
gb|AAK92805.1| unknown protein [Arabidopsis thaliana] 70 3e-11
ref|NP_564504.1| expressed protein; protein id: At1g47380.1 [Ara... 70 3e-11
>ref|NP_172388.1| putative protein phosphatase 2C; protein id: At1g09160.1, supported
by cDNA: gi_16930414 [Arabidopsis thaliana]
gi|25402518|pir||A86224 hypothetical protein [imported]
- Arabidopsis thaliana gi|3249105|gb|AAC24088.1|
Contains similarity to protein phosphatase 2C (ABI1)
gb|X78886 from A. thaliana. [Arabidopsis thaliana]
Length = 428
Score = 89.0 bits (219), Expect = 7e-17
Identities = 38/61 (62%), Positives = 48/61 (78%)
Frame = -1
Query: 743 SGIVRCAVCQVDQPPGDGLSVNSGPFFSPASQPWEGPFLCTNCRKKKDAMEGKRPSSPTV 564
+G+++CAVCQ+D+ P + LS N G S AS+ WEGPFLCT C+KKKDAMEGKRPS +V
Sbjct: 367 TGLLKCAVCQIDESPSEDLSSNGGSIISSASKRWEGPFLCTICKKKKDAMEGKRPSKGSV 426
Query: 563 T 561
T
Sbjct: 427 T 427
>ref|NP_177008.1| putative protein phosphatase; protein id: At1g68410.1, supported by
cDNA: gi_15292894, supported by cDNA: gi_20259036
[Arabidopsis thaliana] gi|25404734|pir||A96708
hypothetical protein T2E12.9 [imported] - Arabidopsis
thaliana gi|6714350|gb|AAF26041.1|AC015986_4 putative
protein phosphatase; 14863-16856 [Arabidopsis thaliana]
gi|15292895|gb|AAK92818.1| putative protein phosphatase
[Arabidopsis thaliana] gi|20259037|gb|AAM14234.1|
putative protein phosphatase [Arabidopsis thaliana]
Length = 436
Score = 86.3 bits (212), Expect = 4e-16
Identities = 36/59 (61%), Positives = 46/59 (77%)
Frame = -1
Query: 740 GIVRCAVCQVDQPPGDGLSVNSGPFFSPASQPWEGPFLCTNCRKKKDAMEGKRPSSPTV 564
GI CA+CQ+D P +G+SV++G FS + +PW+GPFLCT+CR KKDAMEGKRPS V
Sbjct: 377 GIFTCAICQLDLAPSEGISVHAGSIFSTSLKPWQGPFLCTDCRDKKDAMEGKRPSGVKV 435
>dbj|BAB32964.1| P0504D03.12 [Oryza sativa (japonica cultivar-group)]
gi|14495207|dbj|BAB60926.1| OSJNBa0054L14.21 [Oryza
sativa (japonica cultivar-group)]
Length = 475
Score = 83.6 bits (205), Expect = 3e-15
Identities = 37/62 (59%), Positives = 48/62 (76%), Gaps = 1/62 (1%)
Frame = -1
Query: 746 NSGIVRCAVCQVDQPPGDGLSVNSGPFFSPAS-QPWEGPFLCTNCRKKKDAMEGKRPSSP 570
+S + CA+CQVD P +G+SV++G FS +S +PWEGPFLC++CR KKDAMEGKRPS
Sbjct: 413 SSSLFTCAICQVDLEPSEGISVHAGSIFSSSSSKPWEGPFLCSDCRDKKDAMEGKRPSGV 472
Query: 569 TV 564
V
Sbjct: 473 KV 474
>gb|AAK92805.1| unknown protein [Arabidopsis thaliana]
Length = 428
Score = 70.1 bits (170), Expect = 3e-11
Identities = 29/51 (56%), Positives = 39/51 (75%)
Frame = -1
Query: 728 CAVCQVDQPPGDGLSVNSGPFFSPASQPWEGPFLCTNCRKKKDAMEGKRPS 576
CAVCQV+ PG+G+S+++G +PW+GPFLC +C+ KKDAMEGKR S
Sbjct: 369 CAVCQVEVKPGEGVSIHAGSDNCRKLRPWDGPFLCASCQDKKDAMEGKRSS 419
>ref|NP_564504.1| expressed protein; protein id: At1g47380.1 [Arabidopsis thaliana]
gi|25405204|pir||E96514 hypothetical protein T3F24.2
[imported] - Arabidopsis thaliana
gi|9993354|gb|AAG11427.1|AC015449_9 Unknown protein
[Arabidopsis thaliana] gi|23297634|gb|AAN12997.1|
unknown protein [Arabidopsis thaliana]
Length = 428
Score = 70.1 bits (170), Expect = 3e-11
Identities = 29/51 (56%), Positives = 39/51 (75%)
Frame = -1
Query: 728 CAVCQVDQPPGDGLSVNSGPFFSPASQPWEGPFLCTNCRKKKDAMEGKRPS 576
CAVCQV+ PG+G+S+++G +PW+GPFLC +C+ KKDAMEGKR S
Sbjct: 369 CAVCQVEVKPGEGVSIHAGSDNCRKLRPWDGPFLCASCQDKKDAMEGKRSS 419
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 627,672,173
Number of Sequences: 1393205
Number of extensions: 13795402
Number of successful extensions: 33571
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 32207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33558
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 36314099463
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
