Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004585A_C01 KMC004585A_c01
(1005 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO50976.1| hypothetical protein [Dictyostelium discoideum] 35 2.4
emb|CAA70297.1| RAD3 [Schizosaccharomyces pombe] gi|1666238|gb|A... 34 4.1
ref|NP_595357.1| rad3 checkpoint protein [Schizosaccharomyces po... 34 4.1
>gb|AAO50976.1| hypothetical protein [Dictyostelium discoideum]
Length = 495
Score = 34.7 bits (78), Expect = 2.4
Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 6/61 (9%)
Frame = +3
Query: 162 NIENLCLVVFQ----LHHAFSDIA--CEKLNNHPTMAIDAASSGYKQAFEFTHEVSACIV 323
NI+ L L+ F ++ FS + C ++ T+ + S YK++FE+ HE+S C++
Sbjct: 295 NIQYLKLIGFDFIKDINKVFSSLVNNCNNGSSIKTLILQCDCSHYKKSFEYCHEISNCLL 354
Query: 324 S 326
S
Sbjct: 355 S 355
>emb|CAA70297.1| RAD3 [Schizosaccharomyces pombe] gi|1666238|gb|AAC49607.1| protein
kinase Rad3 [Schizosaccharomyces pombe]
Length = 2386
Score = 33.9 bits (76), Expect = 4.1
Identities = 21/68 (30%), Positives = 33/68 (47%)
Frame = +3
Query: 144 FDSGIINIENLCLVVFQLHHAFSDIACEKLNNHPTMAIDAASSGYKQAFEFTHEVSACIV 323
FD IINIE C F+ H F+ + K +N P+ + A + K F F + +
Sbjct: 209 FDLLIINIEEACTFFFESAHFFAQCSYLKKSNFPSPPLFTAWTWIKPCF-FNFVILLKRI 267
Query: 324 SVANSSMF 347
S+ +S +F
Sbjct: 268 SIGDSQLF 275
>ref|NP_595357.1| rad3 checkpoint protein [Schizosaccharomyces pombe]
gi|12644379|sp|Q02099|RAD3_SCHPO DNA repair protein rad3
gi|7493255|pir||T39911 rad3 checkpoint protein - fission
yeast (Schizosaccharomyces pombe)
gi|4581506|emb|CAB40165.1| rad3 checkpoint protein
[Schizosaccharomyces pombe]
Length = 2386
Score = 33.9 bits (76), Expect = 4.1
Identities = 21/68 (30%), Positives = 33/68 (47%)
Frame = +3
Query: 144 FDSGIINIENLCLVVFQLHHAFSDIACEKLNNHPTMAIDAASSGYKQAFEFTHEVSACIV 323
FD IINIE C F+ H F+ + K +N P+ + A + K F F + +
Sbjct: 209 FDLLIINIEEACTFFFESAHFFAQCSYLKKSNFPSPPLFTAWTWIKPCF-FNFVILLKRI 267
Query: 324 SVANSSMF 347
S+ +S +F
Sbjct: 268 SIGDSQLF 275
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 822,731,530
Number of Sequences: 1393205
Number of extensions: 17300923
Number of successful extensions: 39493
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 38035
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39487
length of database: 448,689,247
effective HSP length: 124
effective length of database: 275,931,827
effective search space used: 57945683670
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
