Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004582A_C01 KMC004582A_c01
(630 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_172882.1| hypothetical protein; protein id: At1g14300.1 [... 120 1e-26
dbj|BAC42050.1| unknown protein [Arabidopsis thaliana] 120 1e-26
gb|AAK98681.1|AC021893_15 Unknown protein [Oryza sativa] 105 4e-22
gb|AAG17156.1| cytochrome c oxidase subunit II [Camponotus gombaki] 36 0.37
gb|AAG17158.1| cytochrome c oxidase subunit II [Calomyrmex sp. R... 36 0.37
>ref|NP_172882.1| hypothetical protein; protein id: At1g14300.1 [Arabidopsis
thaliana] gi|25518357|pir||B86277 hypothetical protein
F14L17.6 - Arabidopsis thaliana
gi|7262671|gb|AAF43929.1|AC012188_6 EST gb|AI997595
comes from this gene. [Arabidopsis thaliana]
Length = 339
Score = 120 bits (301), Expect = 1e-26
Identities = 58/83 (69%), Positives = 69/83 (82%)
Frame = -2
Query: 629 TALSIEREPVSDPEIRTQALEAIYLISLQEAGRRAFWSVNGPKIVQIGYEDEEDPKVMEA 450
+ALSIEREPV+DP+IR Q LEAIYLI L+EAGRRAFWSVNGP+I+Q+GYE EEDPK M A
Sbjct: 254 SALSIEREPVTDPDIRVQTLEAIYLIILEEAGRRAFWSVNGPRILQLGYEYEEDPKAMRA 313
Query: 449 YEQLGSLLIHSSNTEEPSSETSK 381
YEQ+GSLL+ + E S E +K
Sbjct: 314 YEQVGSLLVEEAGGPEESLEPTK 336
>dbj|BAC42050.1| unknown protein [Arabidopsis thaliana]
Length = 339
Score = 120 bits (301), Expect = 1e-26
Identities = 58/83 (69%), Positives = 69/83 (82%)
Frame = -2
Query: 629 TALSIEREPVSDPEIRTQALEAIYLISLQEAGRRAFWSVNGPKIVQIGYEDEEDPKVMEA 450
+ALSIEREPV+DP+IR Q LEAIYLI L+EAGRRAFWSVNGP+I+Q+GYE EEDPK M A
Sbjct: 254 SALSIEREPVTDPDIRVQTLEAIYLIILEEAGRRAFWSVNGPRILQLGYEYEEDPKAMRA 313
Query: 449 YEQLGSLLIHSSNTEEPSSETSK 381
YEQ+GSLL+ + E S E +K
Sbjct: 314 YEQVGSLLVEEAGGPEESLEPTK 336
>gb|AAK98681.1|AC021893_15 Unknown protein [Oryza sativa]
Length = 426
Score = 105 bits (263), Expect = 4e-22
Identities = 51/67 (76%), Positives = 59/67 (87%)
Frame = -2
Query: 626 ALSIEREPVSDPEIRTQALEAIYLISLQEAGRRAFWSVNGPKIVQIGYEDEEDPKVMEAY 447
ALS ERE V + EIR QALEAIY+I LQ+ GRRAFWSVNGP+I+Q+GYEDEEDPKVMEAY
Sbjct: 288 ALSHEREAVENSEIRQQALEAIYMIVLQDEGRRAFWSVNGPRILQVGYEDEEDPKVMEAY 347
Query: 446 EQLGSLL 426
E +GSL+
Sbjct: 348 ELIGSLV 354
>gb|AAG17156.1| cytochrome c oxidase subunit II [Camponotus gombaki]
Length = 179
Score = 36.2 bits (82), Expect = 0.37
Identities = 21/54 (38%), Positives = 28/54 (50%), Gaps = 3/54 (5%)
Frame = +3
Query: 399 WFLCIATVNQQGSQLFICFHDFWIF-FIFITDLYYFRS--IYRPKCSSTCLLQG 551
W + + N S+L I FHDF +F IFIT L F ++ K + LLQG
Sbjct: 4 WLISLQNANSPSSELMIFFHDFTMFILIFITSLILFSMMLLFSNKMINRFLLQG 57
>gb|AAG17158.1| cytochrome c oxidase subunit II [Calomyrmex sp. RNJ-2000]
Length = 179
Score = 36.2 bits (82), Expect = 0.37
Identities = 21/54 (38%), Positives = 28/54 (50%), Gaps = 3/54 (5%)
Frame = +3
Query: 399 WFLCIATVNQQGSQLFICFHDF-WIFFIFITDLYYFRSIYR--PKCSSTCLLQG 551
W + + N S+L I FHDF + IFIT L F I+ K ++ LLQG
Sbjct: 4 WLISLQNANSPSSELMIFFHDFTMLILIFITSLILFSMIFLIFNKLTNRFLLQG 57
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 529,077,408
Number of Sequences: 1393205
Number of extensions: 11062004
Number of successful extensions: 24019
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 23262
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24010
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25870486187
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
