Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004580A_C01 KMC004580A_c01
(483 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_193815.1| FAD-linked oxidoreductase family; protein id: A... 187 4e-47
ref|NP_193816.1| FAD-linked oxidoreductase family; protein id: A... 185 3e-46
ref|NP_171700.1| FAD-linked oxidoreductase family; protein id: A... 178 3e-44
ref|NP_172642.1| FAD-linked oxidoreductase family; protein id: A... 164 6e-40
dbj|BAC42794.1| putative reticuline oxidase [Arabidopsis thaliana] 163 8e-40
>ref|NP_193815.1| FAD-linked oxidoreductase family; protein id: At4g20830.1,
supported by cDNA: gi_15983492 [Arabidopsis thaliana]
gi|7488295|pir||T10625 reticuline oxidase homolog
F21C20.180 - Arabidopsis thaliana
gi|5262223|emb|CAB45849.1| reticuline oxidase-like
protein [Arabidopsis thaliana]
gi|7268879|emb|CAB79083.1| reticuline oxidase-like
protein [Arabidopsis thaliana]
gi|15983493|gb|AAL11614.1|AF424621_1
AT4g20830/F21C20_180 [Arabidopsis thaliana]
gi|17065038|gb|AAL32673.1| Unknown protein [Arabidopsis
thaliana] gi|22137036|gb|AAM91363.1|
At4g20830/F21C20_180 [Arabidopsis thaliana]
Length = 540
Score = 187 bits (476), Expect = 4e-47
Identities = 91/136 (66%), Positives = 107/136 (77%), Gaps = 1/136 (0%)
Frame = -3
Query: 481 LGKVGFVFNPYGGKMNEIPSDATPFPHRTGNLFKMQYSVNWHDPSPALAQNYTNQAKIMY 302
LGK+G VFNPYGGKM E+ +A PFPHR LFK+QYSVNW + S + + Y NQAK++Y
Sbjct: 405 LGKIGLVFNPYGGKMAEVAVNAKPFPHRN-KLFKIQYSVNWKENSAEIEKGYLNQAKVLY 463
Query: 301 SYMTPFVSKT-RSAYLNYRDLDIGVNNFDQRSYQEGEVYGTKYFGNNFERLVKVKTAVDP 125
S+MT FVSK RS+Y NYRD+DIGVN+ SY+EGEVYG KYFG NF+RLVK+KTAVDP
Sbjct: 464 SFMTGFVSKNPRSSYFNYRDVDIGVNDHGANSYKEGEVYGRKYFGENFDRLVKIKTAVDP 523
Query: 124 VNFFRNEQSIPVHPSK 77
NFFRNEQSIP SK
Sbjct: 524 GNFFRNEQSIPTLKSK 539
>ref|NP_193816.1| FAD-linked oxidoreductase family; protein id: At4g20840.1
[Arabidopsis thaliana] gi|7488296|pir||T10626 reticuline
oxidase homolog F21C20.190 - Arabidopsis thaliana
gi|5262224|emb|CAB45850.1| reticuline oxidase-like
protein [Arabidopsis thaliana]
gi|7268880|emb|CAB79084.1| reticuline oxidase-like
protein [Arabidopsis thaliana]
Length = 539
Score = 185 bits (469), Expect = 3e-46
Identities = 90/136 (66%), Positives = 108/136 (79%), Gaps = 1/136 (0%)
Frame = -3
Query: 481 LGKVGFVFNPYGGKMNEIPSDATPFPHRTGNLFKMQYSVNWHDPSPALAQNYTNQAKIMY 302
LGK+G VFNPYGGKM E+ +ATPFPHR+ LFK+QYSV W + S + + + NQA ++Y
Sbjct: 404 LGKIGLVFNPYGGKMAEVTVNATPFPHRS-KLFKIQYSVTWQENSVEIEKGFLNQANVLY 462
Query: 301 SYMTPFVSKT-RSAYLNYRDLDIGVNNFDQRSYQEGEVYGTKYFGNNFERLVKVKTAVDP 125
S+MT FVSK R+AYLNYRD+DIGVN+ SY+EGEVYG KYFG+NF+RLVKVKTA DP
Sbjct: 463 SFMTGFVSKNPRNAYLNYRDVDIGVNDHGTNSYEEGEVYGRKYFGDNFDRLVKVKTAADP 522
Query: 124 VNFFRNEQSIPVHPSK 77
NFFRNEQSIP SK
Sbjct: 523 DNFFRNEQSIPTVLSK 538
>ref|NP_171700.1| FAD-linked oxidoreductase family; protein id: At1g01980.1
[Arabidopsis thaliana] gi|25345673|pir||G86151 F22M8.11
protein - Arabidopsis thaliana
gi|8570449|gb|AAF76476.1|AC020622_10 Contains similarity
to berberine bridge enzyme from Berberis stolonifera
gb|AF049347 and contains a FAD binding PF|01565 domain.
[Arabidopsis thaliana]
Length = 541
Score = 178 bits (451), Expect = 3e-44
Identities = 84/135 (62%), Positives = 103/135 (76%), Gaps = 1/135 (0%)
Frame = -3
Query: 478 GKVGFVFNPYGGKMNEIPSDATPFPHRTGNLFKMQYSVNWHDPSPALAQNYTNQAKIMYS 299
GK+G VFNPYGGKM+E+ + ATPFPHR LFK+Q+S+NW DP + ++ + + YS
Sbjct: 404 GKLGLVFNPYGGKMSEVATTATPFPHRK-RLFKVQHSMNWKDPGTDVESSFMEKTRSFYS 462
Query: 298 YMTPFVSKT-RSAYLNYRDLDIGVNNFDQRSYQEGEVYGTKYFGNNFERLVKVKTAVDPV 122
YM PFV+K R YLNYRDLDIG+N+ SY+E EVYG KYFG NF+RLVKVKTAVDP
Sbjct: 463 YMAPFVTKNPRHTYLNYRDLDIGINSHGPNSYREAEVYGRKYFGENFDRLVKVKTAVDPE 522
Query: 121 NFFRNEQSIPVHPSK 77
NFFR+EQSIP P+K
Sbjct: 523 NFFRDEQSIPTLPTK 537
>ref|NP_172642.1| FAD-linked oxidoreductase family; protein id: At1g11770.1
[Arabidopsis thaliana] gi|25345666|pir||F86251
hypothetical protein [imported] - Arabidopsis thaliana
gi|4835780|gb|AAD30246.1|AC007296_7 Strong similarity to
gb|AF049347 berberine bridge enzyme from Berberis
stolonifera. [Arabidopsis thaliana]
Length = 536
Score = 164 bits (414), Expect = 6e-40
Identities = 79/136 (58%), Positives = 97/136 (71%), Gaps = 1/136 (0%)
Frame = -3
Query: 481 LGKVGFVFNPYGGKMNEIPSDATPFPHRTGNLFKMQYSVNWHDPSPALAQNYTNQAKIMY 302
+GK+G VFNPYGG M+ + + TPFPHR L+K+Q+S+NW DP ++ +AK Y
Sbjct: 398 VGKIGLVFNPYGGIMSTVATTKTPFPHRK-KLYKIQHSMNWKDPGTEAETSFLQKAKSFY 456
Query: 301 SYMTPFVSKT-RSAYLNYRDLDIGVNNFDQRSYQEGEVYGTKYFGNNFERLVKVKTAVDP 125
SYM PFV+K R Y+NYRDLDIGVN SY+ EV+G YFG NF+RLVKVKTAVDP
Sbjct: 457 SYMAPFVTKNPRHTYINYRDLDIGVNTPGPNSYRVAEVFGRMYFGENFDRLVKVKTAVDP 516
Query: 124 VNFFRNEQSIPVHPSK 77
NFFR+EQSIP P K
Sbjct: 517 QNFFRDEQSIPTLPGK 532
>dbj|BAC42794.1| putative reticuline oxidase [Arabidopsis thaliana]
Length = 142
Score = 163 bits (413), Expect = 8e-40
Identities = 79/136 (58%), Positives = 96/136 (70%), Gaps = 1/136 (0%)
Frame = -3
Query: 481 LGKVGFVFNPYGGKMNEIPSDATPFPHRTGNLFKMQYSVNWHDPSPALAQNYTNQAKIMY 302
+GK+G VFNPYGG M+ + + TPFPHR L+K+Q+S+NW DP ++ +AK Y
Sbjct: 4 VGKIGLVFNPYGGIMSTVATTKTPFPHRK-KLYKIQHSMNWKDPGTEAETSFLQKAKSFY 62
Query: 301 SYMTPFVSKT-RSAYLNYRDLDIGVNNFDQRSYQEGEVYGTKYFGNNFERLVKVKTAVDP 125
SYM PFV+K R Y+NYRDLDIGVN SY+ EV+G YFG NF+RLVKVKTAVDP
Sbjct: 63 SYMAPFVTKNPRHTYINYRDLDIGVNTPGPNSYRVAEVFGRMYFGENFDRLVKVKTAVDP 122
Query: 124 VNFFRNEQSIPVHPSK 77
NFFR EQSIP P K
Sbjct: 123 QNFFRGEQSIPTLPGK 138
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 402,455,433
Number of Sequences: 1393205
Number of extensions: 8475387
Number of successful extensions: 19453
Number of sequences better than 10.0: 96
Number of HSP's better than 10.0 without gapping: 18841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19343
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13689082854
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
