Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004579A_C01 KMC004579A_c01
(579 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_567924.1| Expressed protein; protein id: At4g33520.1, sup... 51 1e-05
emb|CAA20565.1| metal-transporting P-type ATPase (fragment) [Ara... 48 1e-04
sp|Q9SZC9|AHM6_ARATH Potential copper-transporting ATPase PAA1 g... 48 1e-04
dbj|BAA23769.1| metal-transporting P-type ATPase [Arabidopsis th... 46 3e-04
dbj|BAC10846.1| metal-transporting P-type ATPase-like protein [O... 41 0.009
>ref|NP_567924.1| Expressed protein; protein id: At4g33520.1, supported by cDNA:
gi_16648998, supported by cDNA: gi_20259943 [Arabidopsis
thaliana] gi|16648999|gb|AAL24351.1| metal-transporting
P-type ATPase [Arabidopsis thaliana]
gi|20259944|gb|AAM13319.1| metal-transporting P-type
ATPase [Arabidopsis thaliana]
Length = 237
Score = 50.8 bits (120), Expect = 1e-05
Identities = 21/32 (65%), Positives = 26/32 (80%)
Frame = -3
Query: 577 EAKTAPNWQHQLGETLAEHLTSCGFNSSIRGD 482
EAK+ P+WQ LGETLA HLT+CGF S+ RG+
Sbjct: 195 EAKSVPDWQKSLGETLANHLTNCGFQSTPRGE 226
>emb|CAA20565.1| metal-transporting P-type ATPase (fragment) [Arabidopsis thaliana]
Length = 870
Score = 47.8 bits (112), Expect = 1e-04
Identities = 20/30 (66%), Positives = 24/30 (79%)
Frame = -3
Query: 577 EAKTAPNWQHQLGETLAEHLTSCGFNSSIR 488
EAK+ P+WQ LGETLA HLT+CGF S+ R
Sbjct: 116 EAKSVPDWQKSLGETLANHLTNCGFQSTPR 145
>sp|Q9SZC9|AHM6_ARATH Potential copper-transporting ATPase PAA1 gi|7487953|pir||T06003
metal-transporting ATPase, P-type (EC 3.6.1.-) -
Arabidopsis thaliana gi|4490319|emb|CAB38810.1|
metal-transporting P-type ATPase [Arabidopsis thaliana]
gi|7270300|emb|CAB80069.1| metal-transporting P-type
ATPase [Arabidopsis thaliana]
Length = 949
Score = 47.8 bits (112), Expect = 1e-04
Identities = 20/30 (66%), Positives = 24/30 (79%)
Frame = -3
Query: 577 EAKTAPNWQHQLGETLAEHLTSCGFNSSIR 488
EAK+ P+WQ LGETLA HLT+CGF S+ R
Sbjct: 195 EAKSVPDWQKSLGETLANHLTNCGFQSTPR 224
>dbj|BAA23769.1| metal-transporting P-type ATPase [Arabidopsis thaliana]
Length = 949
Score = 46.2 bits (108), Expect = 3e-04
Identities = 19/30 (63%), Positives = 24/30 (79%)
Frame = -3
Query: 577 EAKTAPNWQHQLGETLAEHLTSCGFNSSIR 488
EAK+ P+WQ LGETLA HL++CGF S+ R
Sbjct: 195 EAKSVPDWQKSLGETLANHLSNCGFQSTPR 224
>dbj|BAC10846.1| metal-transporting P-type ATPase-like protein [Oryza sativa
(japonica cultivar-group)]
Length = 180
Score = 41.2 bits (95), Expect = 0.009
Identities = 17/31 (54%), Positives = 21/31 (66%)
Frame = -3
Query: 577 EAKTAPNWQHQLGETLAEHLTSCGFNSSIRG 485
E K A +WQ Q GE LA HL +CGF S ++G
Sbjct: 132 EVKAAEDWQKQCGEKLANHLGTCGFESRLQG 162
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 473,651,516
Number of Sequences: 1393205
Number of extensions: 9721680
Number of successful extensions: 17099
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 16650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17082
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21426319650
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
