Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004573A_C01 KMC004573A_c01
(662 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAN65367.1| calmodulin-binding protein 60-A [Phaseolus vulgaris] 170 1e-41
pir||T03793 calmodulin-binding protein TCB60 - common tobacco gi... 152 5e-36
ref|NP_200566.1| calmodulin-binding protein; protein id: At5g575... 150 1e-35
pir||B84568 probable calmodulin-binding protein [imported] - Ara... 131 9e-30
gb|AAL11615.1|AF424622_1 At2g18750/MSF3.13 [Arabidopsis thaliana... 131 9e-30
>gb|AAN65367.1| calmodulin-binding protein 60-A [Phaseolus vulgaris]
Length = 101
Score = 170 bits (431), Expect = 1e-41
Identities = 84/101 (83%), Positives = 94/101 (92%), Gaps = 2/101 (1%)
Frame = -3
Query: 654 DDFFSEEEIRIRSNEMLENEDMQHLLRLFSMGG-HSSMNAEDVYSYPSFMPSP-MPNIDE 481
D+FFSEEEIR+RS+EMLENEDMQHLLRLFSMGG H SM+ ED YS+P+FMPSP +PN DE
Sbjct: 1 DEFFSEEEIRLRSHEMLENEDMQHLLRLFSMGGGHGSMSVEDGYSFPTFMPSPNVPNYDE 60
Query: 480 DRSRPGRAVVGWLKIKAAMRWGFFIRKRAAERRAQIEEIDD 358
DRSRPGRAVVGWLKIKAAMRWGFFIRK AAE+RAQIEE+D+
Sbjct: 61 DRSRPGRAVVGWLKIKAAMRWGFFIRKIAAEKRAQIEELDE 101
>pir||T03793 calmodulin-binding protein TCB60 - common tobacco
gi|1698548|gb|AAB37246.1| calmodulin-binding protein
Length = 551
Score = 152 bits (383), Expect = 5e-36
Identities = 77/105 (73%), Positives = 89/105 (84%), Gaps = 4/105 (3%)
Frame = -3
Query: 660 GVDDFFSEEEIRIRSNEMLENEDMQHLLRLFSMGG-HSSMN-AEDVYSYPSFMPSPMPNI 487
GVD+F SEEEIR+RS+E+LEN+DMQHLLRLFSMGG H S+N +ED Y +PSFMPSP P
Sbjct: 446 GVDEFLSEEEIRMRSHEILENDDMQHLLRLFSMGGGHGSVNVSEDGYGFPSFMPSPSPTF 505
Query: 486 --DEDRSRPGRAVVGWLKIKAAMRWGFFIRKRAAERRAQIEEIDD 358
DED G+AVVGWLKIKAAMRWGFF+RK+AAERRAQI E+DD
Sbjct: 506 GYDEDPKPSGKAVVGWLKIKAAMRWGFFVRKKAAERRAQIVELDD 550
>ref|NP_200566.1| calmodulin-binding protein; protein id: At5g57580.1, supported by
cDNA: gi_15810500, supported by cDNA: gi_20259274
[Arabidopsis thaliana] gi|9758319|dbj|BAB08793.1|
calmodulin-binding protein [Arabidopsis thaliana]
gi|15810501|gb|AAL07138.1| putative calmodulin-binding
protein [Arabidopsis thaliana]
gi|20259275|gb|AAM14373.1| putative calmodulin-binding
protein [Arabidopsis thaliana]
Length = 647
Score = 150 bits (379), Expect = 1e-35
Identities = 75/105 (71%), Positives = 87/105 (82%), Gaps = 4/105 (3%)
Frame = -3
Query: 660 GVDDFFSEEEIRIRSNEMLENEDMQHLLRLFSMGGHSSMNA----EDVYSYPSFMPSPMP 493
G DDFFSEEEIR+RS+EMLE+EDMQ LRLFSMGG + +A ED Y++PSF+ +PM
Sbjct: 537 GPDDFFSEEEIRLRSHEMLESEDMQQFLRLFSMGGGGNGSATHLPEDGYTFPSFLHTPMQ 596
Query: 492 NIDEDRSRPGRAVVGWLKIKAAMRWGFFIRKRAAERRAQIEEIDD 358
DEDR R GRAVVGWLKIKAAMRWGFFIR++AAERRAQI E+DD
Sbjct: 597 GYDEDRGRSGRAVVGWLKIKAAMRWGFFIRRKAAERRAQIVELDD 641
>pir||B84568 probable calmodulin-binding protein [imported] - Arabidopsis
thaliana
Length = 652
Score = 131 bits (329), Expect = 9e-30
Identities = 66/105 (62%), Positives = 79/105 (74%), Gaps = 4/105 (3%)
Frame = -3
Query: 660 GVDDFFSEEEIRIRSNEMLENEDMQHLLRLFSMGGHSSMN----AEDVYSYPSFMPSPMP 493
GVD F SEEEIR RSNEMLEN+DMQ LLRLFSM G ED + + SF + M
Sbjct: 545 GVDGFLSEEEIRARSNEMLENDDMQQLLRLFSMNGGDQQTPLNMGEDSFGFHSFGQTSMA 604
Query: 492 NIDEDRSRPGRAVVGWLKIKAAMRWGFFIRKRAAERRAQIEEIDD 358
+ +EDRS G+AVVGWLKIKAAMRWGFFIR++AA+RRAQI ++D+
Sbjct: 605 DYEEDRSNSGKAVVGWLKIKAAMRWGFFIRRKAAQRRAQIVQLDE 649
>gb|AAL11615.1|AF424622_1 At2g18750/MSF3.13 [Arabidopsis thaliana] gi|23505859|gb|AAN28789.1|
At2g18750/MSF3.13 [Arabidopsis thaliana]
Length = 315
Score = 131 bits (329), Expect = 9e-30
Identities = 66/105 (62%), Positives = 79/105 (74%), Gaps = 4/105 (3%)
Frame = -3
Query: 660 GVDDFFSEEEIRIRSNEMLENEDMQHLLRLFSMGGHSSMN----AEDVYSYPSFMPSPMP 493
GVD F SEEEIR RSNEMLEN+DMQ LLRLFSM G ED + + SF + M
Sbjct: 208 GVDGFLSEEEIRARSNEMLENDDMQQLLRLFSMNGGDQQTPLNMGEDSFGFHSFGQTSMA 267
Query: 492 NIDEDRSRPGRAVVGWLKIKAAMRWGFFIRKRAAERRAQIEEIDD 358
+ +EDRS G+AVVGWLKIKAAMRWGFFIR++AA+RRAQI ++D+
Sbjct: 268 DYEEDRSNSGKAVVGWLKIKAAMRWGFFIRRKAAQRRAQIVQLDE 312
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 519,898,872
Number of Sequences: 1393205
Number of extensions: 10958815
Number of successful extensions: 24490
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 23883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24465
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28572683052
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
