Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004569A_C01 KMC004569A_c01
(510 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_224786.1| CT471 hypothetical protein [Chlamydophila pneum... 32 4.2
gb|ZP_00058004.1| hypothetical protein [Thermobifida fusca] 32 5.5
gb|AAD38949.1|AF145213_1 putative DitA1 homolog [beta proteobact... 31 9.5
gb|AAD38950.1|AF145214_1 putative DitA1 homolog [beta proteobact... 31 9.5
>ref|NP_224786.1| CT471 hypothetical protein [Chlamydophila pneumoniae CWL029]
gi|15836122|ref|NP_300646.1| CT471 hypothetical protein
[Chlamydophila pneumoniae J138]
gi|16752448|ref|NP_444710.1| conserved hypothetical
protein [Chlamydophila pneumoniae AR39]
gi|7468117|pir||F72060 conserved hypothetical protein
CP0158 [imported] - Chlamydophila pneumoniae (strains
CWL029 and AR39) gi|25351499|pir||C86564 CT471
hypothetical protein [imported] - Chlamydophila
pneumoniae (strain J138) gi|4376884|gb|AAD18729.1| CT471
hypothetical protein [Chlamydophila pneumoniae CWL029]
gi|7189093|gb|AAF38038.1| conserved hypothetical protein
[Chlamydophila pneumoniae AR39]
gi|8978962|dbj|BAA98797.1| CT471 hypothetical protein
[Chlamydophila pneumoniae J138]
Length = 199
Score = 32.0 bits (71), Expect = 4.2
Identities = 25/84 (29%), Positives = 37/84 (43%), Gaps = 5/84 (5%)
Frame = +2
Query: 206 TCSSCKVSM-----WHKICHVSLKNTHTKSLGS*DDNSD*LKSPQFYVKAPS*L*SPRGP 370
+CSSCK+ M W++ +++ N S LK P+ + S +G
Sbjct: 104 SCSSCKMDMDFRGKWNRSSTITISN---------QKESINLKLPKDVGVIVNTKTSLKGN 154
Query: 371 VCPWSSTNTLPWGVWISLCFCYHN 442
VCP S+ WGVW + YHN
Sbjct: 155 VCPGSTFIKQGWGVWNKI---YHN 175
>gb|ZP_00058004.1| hypothetical protein [Thermobifida fusca]
Length = 384
Score = 31.6 bits (70), Expect = 5.5
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = -1
Query: 219 QLEHV*TCCIAVNLNIFLISSWTVLYLIETY*NGIMISYGVHFDTFPSTH 70
+++H+ A + + ISSW + T GI YG++FD P TH
Sbjct: 309 EMKHLTEASYAQSEEVKKISSWAAILFAPTVVGGI---YGMNFDVMPETH 355
>gb|AAD38949.1|AF145213_1 putative DitA1 homolog [beta proteobacterium DhA-71]
Length = 311
Score = 30.8 bits (68), Expect = 9.5
Identities = 18/51 (35%), Positives = 22/51 (42%), Gaps = 6/51 (11%)
Frame = -3
Query: 232 HGDFTTRTCVNLLHCRELKY----FPNLVLDSALFDRNL--LKWYHDQLWC 98
HG T+ + L R Y F +D FD L KWY+D LWC
Sbjct: 47 HGKIRTKAELGLQKARVAVYGGLIFATWNIDGPSFDEFLGDAKWYYDMLWC 97
>gb|AAD38950.1|AF145214_1 putative DitA1 homolog [beta proteobacterium DhA-73]
Length = 311
Score = 30.8 bits (68), Expect = 9.5
Identities = 18/51 (35%), Positives = 22/51 (42%), Gaps = 6/51 (11%)
Frame = -3
Query: 232 HGDFTTRTCVNLLHCRELKY----FPNLVLDSALFDRNL--LKWYHDQLWC 98
HG T+ + L R Y F +D FD L KWY+D LWC
Sbjct: 47 HGKIRTKAELGLQKARVAVYGGLIFATWNIDGPSFDEFLGDAKWYYDMLWC 97
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 423,421,416
Number of Sequences: 1393205
Number of extensions: 8299823
Number of successful extensions: 16293
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 15958
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16290
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15942513235
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
