Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004568A_C01 KMC004568A_c01
(589 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T00914 leucine-rich repeat protein F21B7.28 - Arabidopsis t... 253 1e-66
ref|NP_563685.1| leucine rich repeat protein family; protein id:... 253 1e-66
ref|NP_192210.1| leucine rich repeat protein family; protein id:... 251 4e-66
ref|NP_188391.1| leucine rich repeat protein family; protein id:... 118 6e-26
gb|AAO17351.1| Hypothetical protein [Oryza sativa (japonica cult... 70 3e-11
>pir||T00914 leucine-rich repeat protein F21B7.28 - Arabidopsis thaliana
Length = 397
Score = 253 bits (646), Expect = 1e-66
Identities = 117/162 (72%), Positives = 143/162 (88%)
Frame = -2
Query: 588 LSRLDQLNYLDLSLNQFTGPVPARIFSFPLTNLQLERNQFYGPVQPVDRVAIPTVDLSYN 409
L RL+QLNYLDLSLN+FTG +PAR+F+FP+TNLQL+RN F+G +QP ++V I TVDLSYN
Sbjct: 236 LLRLNQLNYLDLSLNRFTGTIPARVFAFPITNLQLQRNFFFGLIQPANQVTISTVDLSYN 295
Query: 408 RFSGQISPMLASVQSLYLNNNRFSGRVPASFVDRLLDASIQILYLQHNYLTGIEISPTPV 229
RFSG ISP+L+SV++LYLN+NRF+G VPASFV+RLL A+IQ LYLQHN+LTGI+ISP
Sbjct: 296 RFSGGISPLLSSVENLYLNSNRFTGEVPASFVERLLSANIQTLYLQHNFLTGIQISPAAE 355
Query: 228 IPGRSSLCLQYNCMVPPVEAPCPLRAGNQKTRPTTQCHQWKG 103
IP SSLCLQYNCMVPP++ PCPL+AG QKTRPTTQC +W+G
Sbjct: 356 IPVSSSLCLQYNCMVPPLQTPCPLKAGPQKTRPTTQCTEWRG 397
Score = 49.3 bits (116), Expect = 4e-05
Identities = 42/138 (30%), Positives = 65/138 (46%), Gaps = 6/138 (4%)
Frame = -2
Query: 588 LSRLDQLNYLDLSLNQFTGPVPARIFSFP-LTNLQLERNQFYG--PVQPVDRVAIPTVDL 418
+ +L L L + + G +PA I L L + RN G P + + T+DL
Sbjct: 95 IGKLSALTELSIVPGRIMGALPATISQLKDLRFLAISRNFISGEIPASLGEVRGLRTLDL 154
Query: 417 SYNRFSGQISPMLAS---VQSLYLNNNRFSGRVPASFVDRLLDASIQILYLQHNYLTGIE 247
SYN+ +G ISP + S + +L L +N +G +P L ++ + L+ N LTG
Sbjct: 155 SYNQLTGTISPSIGSLPELSNLILCHNHLTGSIPP-----FLSQTLTRIDLKRNSLTG-S 208
Query: 246 ISPTPVIPGRSSLCLQYN 193
ISP + P L L +N
Sbjct: 209 ISPASLPPSLQYLSLAWN 226
>ref|NP_563685.1| leucine rich repeat protein family; protein id: At1g03440.1,
supported by cDNA: gi_12083225 [Arabidopsis thaliana]
gi|25406734|pir||A86166 protein F21B7.6 [imported] -
Arabidopsis thaliana gi|9280642|gb|AAF86511.1|AC002560_4
F21B7.6 [Arabidopsis thaliana]
gi|12083226|gb|AAG48772.1|AF332409_1 unknown protein
[Arabidopsis thaliana]
Length = 395
Score = 253 bits (646), Expect = 1e-66
Identities = 117/162 (72%), Positives = 143/162 (88%)
Frame = -2
Query: 588 LSRLDQLNYLDLSLNQFTGPVPARIFSFPLTNLQLERNQFYGPVQPVDRVAIPTVDLSYN 409
L RL+QLNYLDLSLN+FTG +PAR+F+FP+TNLQL+RN F+G +QP ++V I TVDLSYN
Sbjct: 234 LLRLNQLNYLDLSLNRFTGTIPARVFAFPITNLQLQRNFFFGLIQPANQVTISTVDLSYN 293
Query: 408 RFSGQISPMLASVQSLYLNNNRFSGRVPASFVDRLLDASIQILYLQHNYLTGIEISPTPV 229
RFSG ISP+L+SV++LYLN+NRF+G VPASFV+RLL A+IQ LYLQHN+LTGI+ISP
Sbjct: 294 RFSGGISPLLSSVENLYLNSNRFTGEVPASFVERLLSANIQTLYLQHNFLTGIQISPAAE 353
Query: 228 IPGRSSLCLQYNCMVPPVEAPCPLRAGNQKTRPTTQCHQWKG 103
IP SSLCLQYNCMVPP++ PCPL+AG QKTRPTTQC +W+G
Sbjct: 354 IPVSSSLCLQYNCMVPPLQTPCPLKAGPQKTRPTTQCTEWRG 395
Score = 49.3 bits (116), Expect = 4e-05
Identities = 42/138 (30%), Positives = 65/138 (46%), Gaps = 6/138 (4%)
Frame = -2
Query: 588 LSRLDQLNYLDLSLNQFTGPVPARIFSFP-LTNLQLERNQFYG--PVQPVDRVAIPTVDL 418
+ +L L L + + G +PA I L L + RN G P + + T+DL
Sbjct: 93 IGKLSALTELSIVPGRIMGALPATISQLKDLRFLAISRNFISGEIPASLGEVRGLRTLDL 152
Query: 417 SYNRFSGQISPMLAS---VQSLYLNNNRFSGRVPASFVDRLLDASIQILYLQHNYLTGIE 247
SYN+ +G ISP + S + +L L +N +G +P L ++ + L+ N LTG
Sbjct: 153 SYNQLTGTISPSIGSLPELSNLILCHNHLTGSIPP-----FLSQTLTRIDLKRNSLTG-S 206
Query: 246 ISPTPVIPGRSSLCLQYN 193
ISP + P L L +N
Sbjct: 207 ISPASLPPSLQYLSLAWN 224
>ref|NP_192210.1| leucine rich repeat protein family; protein id: At4g03010.1
[Arabidopsis thaliana] gi|7487941|pir||T01392
leucine-rich repeat protein T4I9.11 - Arabidopsis
thaliana gi|3924604|gb|AAC79105.1| putative leucine-rich
repeat protein [Arabidopsis thaliana]
gi|7269786|emb|CAB77786.1| putative leucine-rich repeat
protein [Arabidopsis thaliana]
Length = 395
Score = 251 bits (642), Expect = 4e-66
Identities = 116/162 (71%), Positives = 143/162 (87%)
Frame = -2
Query: 588 LSRLDQLNYLDLSLNQFTGPVPARIFSFPLTNLQLERNQFYGPVQPVDRVAIPTVDLSYN 409
L RL+QLNYLDLSLN+FTG +P +IF+FP+TNLQL+RN FYG +QP ++V IPTVDLSYN
Sbjct: 234 LLRLNQLNYLDLSLNRFTGAIPGQIFTFPITNLQLQRNFFYGVIQPPNQVTIPTVDLSYN 293
Query: 408 RFSGQISPMLASVQSLYLNNNRFSGRVPASFVDRLLDASIQILYLQHNYLTGIEISPTPV 229
RFSG++SP+L++VQ+LYLNNNRF+G+VP SFVDRLL ++IQ LYLQHN+LTGI+ISP
Sbjct: 294 RFSGELSPLLSNVQNLYLNNNRFTGQVPVSFVDRLLASNIQTLYLQHNFLTGIQISPAAD 353
Query: 228 IPGRSSLCLQYNCMVPPVEAPCPLRAGNQKTRPTTQCHQWKG 103
IP SSLCLQYNCMV PV+ PCP++AG QKTRPTTQC +W+G
Sbjct: 354 IPVSSSLCLQYNCMVLPVQTPCPVKAGLQKTRPTTQCSEWRG 395
Score = 51.2 bits (121), Expect = 9e-06
Identities = 45/144 (31%), Positives = 69/144 (47%), Gaps = 6/144 (4%)
Frame = -2
Query: 588 LSRLDQLNYLDLSLNQFTGPVPARIF-SFPLTNLQLERNQFYG--PVQPVDRVAIPTVDL 418
+ +L L L + + G +P I S L L + RN G P + + T+DL
Sbjct: 93 IGKLSALTELSIVPGRIMGSLPHTISQSKNLRFLAISRNFISGEIPASLSELRGLKTLDL 152
Query: 417 SYNRFSGQISPMLAS---VQSLYLNNNRFSGRVPASFVDRLLDASIQILYLQHNYLTGIE 247
SYN+ +G I P + S + +L L +N +G +P + L S+ + L+ N LTGI
Sbjct: 153 SYNQLTGSIPPSIGSLPELSNLILCHNHLNGSIP-----QFLSQSLTRIDLKRNNLTGI- 206
Query: 246 ISPTPVIPGRSSLCLQYNCMVPPV 175
IS T + P L L +N + PV
Sbjct: 207 ISLTSLPPSLQYLSLAWNQLTGPV 230
>ref|NP_188391.1| leucine rich repeat protein family; protein id: At3g17640.1
[Arabidopsis thaliana] gi|9294152|dbj|BAB02054.1|
leucine-rich repeat disease resistance protein-like
[Arabidopsis thaliana]
Length = 396
Score = 118 bits (295), Expect = 6e-26
Identities = 62/163 (38%), Positives = 96/163 (58%), Gaps = 6/163 (3%)
Frame = -2
Query: 579 LDQLNYLDLSLNQFTGPVPARIFSFPLTNLQLERNQFYGPVQPVDRVAIPT---VDLSYN 409
L +L Y+DLS+NQFTG +P+ +FS ++ + L+RN F +P VDLS+N
Sbjct: 227 LTELIYIDLSMNQFTGAIPSSLFSPTISTMFLQRNNFTSIATSNATSLLPEGSIVDLSHN 286
Query: 408 RFSGQISPMLASVQSLYLNNNRFSGRVPASFVDRLLDASIQILYLQHNYLTGIEISPTPV 229
SG+++P L ++L+LNNNR +G +P +V L++ + + L+LQHNY T +
Sbjct: 287 SISGELTPALVGAEALFLNNNRLTGDIPEEYVKSLINGTTKQLFLQHNYFTRFPWNSGLQ 346
Query: 228 IPGRSSLCLQYNCM-VPPVE--APCPLRAGNQKTRPTTQCHQW 109
+P SLCL YNCM PV + CP+ +RP +QC ++
Sbjct: 347 LPDSVSLCLSYNCMETDPVVGLSTCPIEVAPLLSRPASQCSRF 389
Score = 49.3 bits (116), Expect = 4e-05
Identities = 35/94 (37%), Positives = 50/94 (52%), Gaps = 7/94 (7%)
Frame = -2
Query: 588 LSRLDQLNYLDLSLNQFTGPVPARIFSFPLTN-LQLERNQFYGPVQPVDRVAIP---TVD 421
+S L L L L TGP+P R S PL + L RN+ GP+ PV ++ T+D
Sbjct: 86 ISILTHLTQLILYPGSVTGPLPPRFDSLPLLRVISLTRNRLTGPI-PVSFSSLSNLHTLD 144
Query: 420 LSYNRFSGQISPMLAS---VQSLYLNNNRFSGRV 328
LSYN+ SG + P L + ++ L L +N FS +
Sbjct: 145 LSYNQLSGSLPPFLTTLPRLKVLVLASNHFSNNL 178
>gb|AAO17351.1| Hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 1030
Score = 69.7 bits (169), Expect = 3e-11
Identities = 53/148 (35%), Positives = 75/148 (49%), Gaps = 6/148 (4%)
Frame = -2
Query: 570 LNYLDLSLNQFTGPVPARIFSFP-LTNLQLERNQFYG--PVQPVDRVAIPTVDLSYNRFS 400
L+++DLS NQ +P+ I S P L N+ G P + D ++ +DLS NR S
Sbjct: 454 LSFIDLSHNQLRSALPSNILSIPALQTFAAADNELTGGVPDELADCPSLSALDLSNNRLS 513
Query: 399 GQISPMLASVQ---SLYLNNNRFSGRVPASFVDRLLDASIQILYLQHNYLTGIEISPTPV 229
G I LAS Q SL L NNRF+G++PA+ + ++ +L L +N+ +G S
Sbjct: 514 GAIPASLASCQRLVSLSLRNNRFTGQIPAAVA---MMPTLSVLDLSNNFFSGEIPSNFGS 570
Query: 228 IPGRSSLCLQYNCMVPPVEAPCPLRAGN 145
P L L YN + PV A LR N
Sbjct: 571 SPALEMLNLAYNNLTGPVPATGLLRTIN 598
Score = 52.4 bits (124), Expect = 4e-06
Identities = 44/150 (29%), Positives = 72/150 (47%), Gaps = 10/150 (6%)
Frame = -2
Query: 588 LSRLDQLNYLDLSLNQFTGPVPARIFSFP-LTNLQLERNQFYG--PVQPVDRVAIPTVDL 418
+ L +L YLD+++ GP+P + P L + L +N G P + + ++ +DL
Sbjct: 232 IGNLAKLQYLDMAIGSLEGPIPPELGRLPYLNTVYLYKNNIGGQIPKELGNLSSLIMLDL 291
Query: 417 SYNRFSGQISPMLASVQSLYLNN---NRFSGRVPASFVDRLLDASIQILYLQHNYLTGIE 247
S N +G I P LA + +L L N N+ G +PA + +++L L +N LTG
Sbjct: 292 SDNAITGTIPPELAQLTNLQLLNLMCNKIKGGIPAGIGEL---PKLEVLELWNNSLTG-- 346
Query: 246 ISPTPVIPGRSS----LCLQYNCMVPPVEA 169
P P G++ L + N + PV A
Sbjct: 347 --PLPPSLGKAQPLQWLDVSTNALSGPVPA 374
Score = 47.4 bits (111), Expect = 1e-04
Identities = 37/104 (35%), Positives = 56/104 (53%), Gaps = 7/104 (6%)
Frame = -2
Query: 588 LSRLDQLNYLDLSLNQFTGPVPARIFSFP-LTNLQLERNQFYGPVQPVDRVAIPT---VD 421
L+ L+ LDLS N+ +G +PA + S L +L L N+F G + P +PT +D
Sbjct: 496 LADCPSLSALDLSNNRLSGAIPASLASCQRLVSLSLRNNRFTGQI-PAAVAMMPTLSVLD 554
Query: 420 LSYNRFSGQISPMLASVQSLYLNN---NRFSGRVPASFVDRLLD 298
LS N FSG+I S +L + N N +G VPA+ + R ++
Sbjct: 555 LSNNFFSGEIPSNFGSSPALEMLNLAYNNLTGPVPATGLLRTIN 598
Score = 40.4 bits (93), Expect = 0.017
Identities = 35/118 (29%), Positives = 55/118 (45%), Gaps = 6/118 (5%)
Frame = -2
Query: 588 LSRLDQLNYLDLSLNQFTGPVPARIFSF-PLTNLQLERNQFYGPVQP-VDRVA-IPTVDL 418
L L L L + N+F+G +PA I + L L + GP+ P + R+ + TV L
Sbjct: 208 LFELSSLEQLIIGYNEFSGAIPAAIGNLAKLQYLDMAIGSLEGPIPPELGRLPYLNTVYL 267
Query: 417 SYNRFSGQISPMLASVQSLY---LNNNRFSGRVPASFVDRLLDASIQILYLQHNYLTG 253
N GQI L ++ SL L++N +G +P ++Q+L L N + G
Sbjct: 268 YKNNIGGQIPKELGNLSSLIMLDLSDNAITGTIPPELAQL---TNLQLLNLMCNKIKG 322
Score = 35.8 bits (81), Expect = 0.41
Identities = 35/121 (28%), Positives = 49/121 (39%), Gaps = 31/121 (25%)
Frame = -2
Query: 588 LSRLDQLNYLDLSLNQFTGPVPARIFSFP-LTNLQLERNQFYGPVQPVD---RVAIPTVD 421
L + L LD+S N F G PA + + LT+L N F GP+ P D A+ T+D
Sbjct: 112 LVSIPTLRELDVSDNNFKGRFPAGLGACASLTHLNASGNNFAGPL-PADIGNATALETLD 170
Query: 420 LSYNRFSGQISPM---------------------------LASVQSLYLNNNRFSGRVPA 322
FSG I L+S++ L + N FSG +PA
Sbjct: 171 FRGGFFSGGIPKTYGKLQKLKFLGLSGNNLNGALPAELFELSSLEQLIIGYNEFSGAIPA 230
Query: 321 S 319
+
Sbjct: 231 A 231
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 615,453,713
Number of Sequences: 1393205
Number of extensions: 16601021
Number of successful extensions: 81043
Number of sequences better than 10.0: 978
Number of HSP's better than 10.0 without gapping: 56218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75833
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22283372436
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
