Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004566A_C02 KMC004566A_c02
(599 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_200073.1| putative protein; protein id: At5g52610.1 [Arab... 35 0.96
gb|ZP_00000110.1| hypothetical protein [Ferroplasma acidarmanus] 33 3.7
ref|NP_704608.1| hypothetical protein [Plasmodium falciparum 3D7... 33 3.7
ref|NP_572638.1| CG2124-PA [Drosophila melanogaster] gi|7291173|... 32 4.8
ref|XP_142916.1| similar to RIKEN cDNA 1700001F09 [Mus musculus] 32 6.2
>ref|NP_200073.1| putative protein; protein id: At5g52610.1 [Arabidopsis thaliana]
gi|8953716|dbj|BAA98079.1|
gene_id:F6N7.10~pir||T04206~similar to unknown protein
[Arabidopsis thaliana]
Length = 351
Score = 34.7 bits (78), Expect = 0.96
Identities = 20/51 (39%), Positives = 28/51 (54%)
Frame = +2
Query: 410 SCLYHFQRPSQPLCRLVTPCCLHHNPNYHSPPCVNLLMISNFSIISFIWVS 562
SC +HF SQP LVT N + H+P CVN L+ + +S +W+S
Sbjct: 63 SCRWHFFSSSQP--SLVTKATCSANNSSHTPDCVNGLICVEY--MSQLWIS 109
>gb|ZP_00000110.1| hypothetical protein [Ferroplasma acidarmanus]
Length = 538
Score = 32.7 bits (73), Expect = 3.7
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Frame = -3
Query: 249 FMEDISKIVRRVMPQLIFSNVSKCKGYVQAWNRLTFYCCKKISFFIDSIF---IFQHYFF 79
F+ +I ++ ++ L++ N+SK K +N + F + F+I I +F Y
Sbjct: 428 FLMNIMGVISGLLTYLVYFNISKFKAAYIEFNSMMFSMTALVFFYISIISLDDLFPFYGI 487
Query: 78 LSLLSFSLMLW 46
L FS +LW
Sbjct: 488 KQQLYFSAILW 498
>ref|NP_704608.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23504967|emb|CAD51751.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 843
Score = 32.7 bits (73), Expect = 3.7
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +2
Query: 5 INFDIKYYNFFLNHQSMRENDSNERKK*CWNINIESIKN 121
+NF++ + NF +NH + N++N C N I S+ N
Sbjct: 503 MNFNMNHMNFNMNHMNNHNNNNNNNNNNCSNSMIPSVMN 541
>ref|NP_572638.1| CG2124-PA [Drosophila melanogaster] gi|7291173|gb|AAF46606.1|
CG2124-PA [Drosophila melanogaster]
gi|17946214|gb|AAL49147.1| RE57138p [Drosophila
melanogaster]
Length = 629
Score = 32.3 bits (72), Expect = 4.8
Identities = 17/61 (27%), Positives = 29/61 (46%), Gaps = 2/61 (3%)
Frame = -3
Query: 183 KCKGYVQAWNRLTFYCCKKISFFIDS--IFIFQHYFFLSLLSFSLMLW*FKKKL*YLISK 10
K K Y++ WN L CC++I + + + ++ L L+ +W KKL + K
Sbjct: 139 KAKNYMEIWNTLDIECCRRIERWSSEQLLLVSDAWYRLGLVRIGEYVWLALKKLGRKLRK 198
Query: 9 L 7
L
Sbjct: 199 L 199
>ref|XP_142916.1| similar to RIKEN cDNA 1700001F09 [Mus musculus]
Length = 268
Score = 32.0 bits (71), Expect = 6.2
Identities = 23/83 (27%), Positives = 37/83 (43%)
Frame = -3
Query: 336 TDTSRNPLMTFVNKLMNISRDKMATC*RRFMEDISKIVRRVMPQLIFSNVSKCKGYVQAW 157
T+ N + F ++ + D++ T +R +DIS+ + SKCK Q
Sbjct: 121 TNKDLNDRINFETFMLEMQHDQVMTDLKRMPQDISEAL------------SKCK---QLT 165
Query: 156 NRLTFYCCKKISFFIDSIFIFQH 88
FYCC+ + I+S I QH
Sbjct: 166 KEYQFYCCRNCNLLIESNLI-QH 187
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 480,717,865
Number of Sequences: 1393205
Number of extensions: 9791199
Number of successful extensions: 27771
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 26735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27753
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23426109484
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
