Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004563A_C01 KMC004563A_c01
(477 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_192740.1| putative oxidoreductase; protein id: At4g10020.... 56 2e-07
gb|AAM46847.1|AF498264_1 steroleosin-B [Sesamum indicum] 54 1e-06
ref|NP_568742.1| 11-beta-hydroxysteroid dehydrogenase-like; prot... 40 0.017
gb|ZP_00049840.1| hypothetical protein [Magnetospirillum magneto... 39 0.029
ref|NP_203163.1|ND4_15766 NADH dehydrogenase subunit 4 [Triboliu... 35 0.32
>ref|NP_192740.1| putative oxidoreductase; protein id: At4g10020.1 [Arabidopsis
thaliana] gi|7484775|pir||T04006 11beta-hydroxysteroid
dehydrogenase homolog T5L19.150 - Arabidopsis thaliana
gi|4539005|emb|CAB39626.1| putative oxidoreductase
[Arabidopsis thaliana] gi|7267698|emb|CAB78125.1|
putative oxidoreductase [Arabidopsis thaliana]
Length = 389
Score = 56.2 bits (134), Expect = 2e-07
Identities = 22/31 (70%), Positives = 27/31 (86%)
Frame = -1
Query: 420 DINIWGNVYPMLVALPYLHQSNGCVIINASI 328
DIN WGNVYP VALPYLHQ+NG +++NAS+
Sbjct: 157 DINFWGNVYPTYVALPYLHQTNGRIVVNASV 187
>gb|AAM46847.1|AF498264_1 steroleosin-B [Sesamum indicum]
Length = 362
Score = 53.5 bits (127), Expect = 1e-06
Identities = 22/31 (70%), Positives = 26/31 (82%)
Frame = -1
Query: 420 DINIWGNVYPMLVALPYLHQSNGCVIINASI 328
DIN WGNVYP VALPYL +SNG +I+NAS+
Sbjct: 156 DINFWGNVYPTYVALPYLRESNGRIIVNASV 186
>ref|NP_568742.1| 11-beta-hydroxysteroid dehydrogenase-like; protein id: At5g50600.1,
supported by cDNA: gi_15450584, supported by cDNA:
gi_17065383, supported by cDNA: gi_17386149, supported
by cDNA: gi_20148648 [Arabidopsis thaliana]
gi|22327700|ref|NP_680418.1| 11-beta-hydroxysteroid
dehydrogenase-like; protein id: At5g50700.1, supported
by cDNA: gi_15450584, supported by cDNA: gi_17065383,
supported by cDNA: gi_17386149, supported by cDNA:
gi_20148648 [Arabidopsis thaliana]
gi|8777393|dbj|BAA96983.1| 11-beta-hydroxysteroid
dehydrogenase-like [Arabidopsis thaliana]
gi|9758769|dbj|BAB09145.1| 11-beta-hydroxysteroid
dehydrogenase-like [Arabidopsis thaliana]
gi|15450585|gb|AAK96564.1| AT5g50700/MFB16_9
[Arabidopsis thaliana] gi|17065384|gb|AAL32846.1|
11-beta-hydroxysteroid dehydrogenase-like [Arabidopsis
thaliana] gi|17386150|gb|AAL38621.1|AF446888_1
AT5g50700/MFB16_9 [Arabidopsis thaliana]
gi|20148649|gb|AAM10215.1| 11-beta-hydroxysteroid
dehydrogenase-like [Arabidopsis thaliana]
Length = 349
Score = 39.7 bits (91), Expect = 0.017
Identities = 17/33 (51%), Positives = 22/33 (66%)
Frame = -1
Query: 420 DINIWGNVYPMLVALPYLHQSNGCVIINASIAS 322
D N WG+VY ALPYL QSNG ++ +S A+
Sbjct: 155 DTNFWGSVYTTRAALPYLRQSNGKIVAMSSSAA 187
>gb|ZP_00049840.1| hypothetical protein [Magnetospirillum magnetotacticum]
Length = 237
Score = 38.9 bits (89), Expect = 0.029
Identities = 18/33 (54%), Positives = 23/33 (69%)
Frame = -1
Query: 420 DINIWGNVYPMLVALPYLHQSNGCVIINASIAS 322
D+N WG VY LVALP+L +S G +I S+AS
Sbjct: 119 DVNFWGLVYGSLVALPHLKKSRGTLINLGSVAS 151
>ref|NP_203163.1|ND4_15766 NADH dehydrogenase subunit 4 [Tribolium castaneum]
gi|15282343|emb|CAC51707.1| NADH dehydrogenase subunit 4
[Tribolium castaneum]
Length = 444
Score = 35.4 bits (80), Expect = 0.32
Identities = 27/119 (22%), Positives = 58/119 (48%), Gaps = 7/119 (5%)
Frame = -2
Query: 410 FGGMFIQCLWLFLTFTKAMVVLLSMHQL---QAFTKMSLYGVSIIVYALSLSFSVFFMIL 240
FGG + + LFL+F ++LL+ ++ ++T ++ V +++ +L L+FS + +
Sbjct: 51 FGGDLLSFMMLFLSFWICSLMLLASEKIYLKNSWTGFFMFVVLMLMLSLYLTFSSLNLFI 110
Query: 239 CSIAFGTTWLRNFQRLMGLDSD*NRLQ----VIFFS*LPTYFFKLGCYSCYWEKSKLPY 75
I F + + ++G RLQ ++F++ L + + + CY + L Y
Sbjct: 111 FYIFFEVSLIPTLILIVGWGYQPERLQAGVYLLFYTLLASLPMMISLFFCYGKFYSLHY 169
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 388,843,790
Number of Sequences: 1393205
Number of extensions: 7943557
Number of successful extensions: 18683
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 18232
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18676
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13106568690
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
