Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004559A_C01 KMC004559A_c01
(689 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||A96754 Similar to part of disease resistance protein [impor... 73 3e-12
ref|NP_177432.1| disease resistance protein (TIR-NBS class), put... 73 3e-12
pir||A54810 TMV resistance protein N - tobacco (Nicotiana glutin... 72 7e-12
ref|NP_198826.1| disease resistance protein (TIR-NBS-LRR class),... 72 9e-12
dbj|BAB09118.1| gene_id:MUD12.7~similar to disease resistance pr... 72 9e-12
>pir||A96754 Similar to part of disease resistance protein [imported] -
Arabidopsis thaliana gi|5903078|gb|AAD55636.1|AC008017_9
Similar to part of disease resistance protein
[Arabidopsis thaliana]
Length = 414
Score = 73.2 bits (178), Expect = 3e-12
Identities = 38/74 (51%), Positives = 48/74 (64%)
Frame = +2
Query: 422 SFSSFHQNHISMSSSSSNHQWIYDVFINFRGKDTRHSFVSHLYTALSNAGVNVFLDDENL 601
S F +S SSSSS +DVF++FRGKDTR +FVS LY AL + G+ F DDE L
Sbjct: 17 SLRIFESRSLSSSSSSSFTPQKFDVFLSFRGKDTRKNFVSFLYKALVSKGIRTFKDDEEL 76
Query: 602 ERGLELEPELQKLI 643
ERG + PEL++ I
Sbjct: 77 ERGRPIPPELRQAI 90
>ref|NP_177432.1| disease resistance protein (TIR-NBS class), putative; protein id:
At1g72890.1 [Arabidopsis thaliana]
Length = 438
Score = 73.2 bits (178), Expect = 3e-12
Identities = 38/74 (51%), Positives = 48/74 (64%)
Frame = +2
Query: 422 SFSSFHQNHISMSSSSSNHQWIYDVFINFRGKDTRHSFVSHLYTALSNAGVNVFLDDENL 601
S F +S SSSSS +DVF++FRGKDTR +FVS LY AL + G+ F DDE L
Sbjct: 17 SLRIFESRSLSSSSSSSFTPQKFDVFLSFRGKDTRKNFVSFLYKALVSKGIRTFKDDEEL 76
Query: 602 ERGLELEPELQKLI 643
ERG + PEL++ I
Sbjct: 77 ERGRPIPPELRQAI 90
>pir||A54810 TMV resistance protein N - tobacco (Nicotiana glutinosa)
gi|558887|gb|AAA50763.1| N
Length = 1144
Score = 72.0 bits (175), Expect = 7e-12
Identities = 33/63 (52%), Positives = 45/63 (71%)
Frame = +2
Query: 455 MSSSSSNHQWIYDVFINFRGKDTRHSFVSHLYTALSNAGVNVFLDDENLERGLELEPELQ 634
M+SSSS+ +W YDVF++FRG+DTR +F SHLY L++ G+ F DD+ LE G + EL
Sbjct: 1 MASSSSSSRWSYDVFLSFRGEDTRKTFTSHLYEVLNDKGIKTFQDDKRLEYGATIPGELC 60
Query: 635 KLI 643
K I
Sbjct: 61 KAI 63
>ref|NP_198826.1| disease resistance protein (TIR-NBS-LRR class), putative; protein
id: At5g40100.1 [Arabidopsis thaliana]
Length = 1017
Score = 71.6 bits (174), Expect = 9e-12
Identities = 34/63 (53%), Positives = 46/63 (72%)
Frame = +2
Query: 455 MSSSSSNHQWIYDVFINFRGKDTRHSFVSHLYTALSNAGVNVFLDDENLERGLELEPELQ 634
M+SSS++ YDVF++FRG+DTRHS VSHLY AL++ G+ F DD+ LE G + ELQ
Sbjct: 1 MASSSASRASSYDVFLSFRGEDTRHSIVSHLYEALTSRGIATFKDDKRLELGDHISEELQ 60
Query: 635 KLI 643
+ I
Sbjct: 61 RAI 63
>dbj|BAB09118.1| gene_id:MUD12.7~similar to disease resistance proteins; TMV
resistance protein N-like [Arabidopsis thaliana]
Length = 1031
Score = 71.6 bits (174), Expect = 9e-12
Identities = 34/63 (53%), Positives = 46/63 (72%)
Frame = +2
Query: 455 MSSSSSNHQWIYDVFINFRGKDTRHSFVSHLYTALSNAGVNVFLDDENLERGLELEPELQ 634
M+SSS++ YDVF++FRG+DTRHS VSHLY AL++ G+ F DD+ LE G + ELQ
Sbjct: 1 MASSSASRASSYDVFLSFRGEDTRHSIVSHLYEALTSRGIATFKDDKRLELGDHISEELQ 60
Query: 635 KLI 643
+ I
Sbjct: 61 RAI 63
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 525,547,427
Number of Sequences: 1393205
Number of extensions: 10578909
Number of successful extensions: 23924
Number of sequences better than 10.0: 289
Number of HSP's better than 10.0 without gapping: 23169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23894
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 31118763720
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
