Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004554A_C01 KMC004554A_c01
(596 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P31300|CYSL_CAPAN Cysteine synthase, chloroplast precursor (O... 153 1e-36
dbj|BAB20862.1| plastidic cysteine synthase 1 [Solanum tuberosum] 153 2e-36
dbj|BAB20863.1| plastidic cysteine synthase 2 [Solanum tuberosum] 153 2e-36
dbj|BAC57641.1| putative plastidic cysteine synthase 1 [Oryza sa... 153 2e-36
sp|O81155|CYSL_SOLTU Cysteine synthase, chloroplast precursor (O... 149 2e-35
>sp|P31300|CYSL_CAPAN Cysteine synthase, chloroplast precursor (O-acetylserine
sulfhydrylase) (O-acetylserine (Thiol)-lyase) (CSase B)
(CS-B) (OAS-TL B) gi|322740|pir||A43407 cysteine
synthase (EC 4.2.99.8) precursor - pepper
gi|17944|emb|CAA46086.1| O-acetylserine (thiol)-lyase
[Capsicum annuum]
Length = 374
Score = 153 bits (387), Expect = 1e-36
Identities = 78/89 (87%), Positives = 85/89 (94%)
Frame = -3
Query: 594 GNLDEEVVDEVIAISSDEAVETAKQVALQEGLLVGISSGAAAAAALQVGKRPENAGKLIA 415
GNLD++V+DEVI ISSDEAVETAKQ+ALQEGLLVGISSGAAA AA+QV KRPENAGKLIA
Sbjct: 285 GNLDQDVMDEVIEISSDEAVETAKQLALQEGLLVGISSGAAALAAIQVAKRPENAGKLIA 344
Query: 414 VVFPSFGERYLSTILFQSIREECENMQPE 328
VVFPSFGERYLS+ILFQSIREECE M+PE
Sbjct: 345 VVFPSFGERYLSSILFQSIREECEKMKPE 373
>dbj|BAB20862.1| plastidic cysteine synthase 1 [Solanum tuberosum]
Length = 386
Score = 153 bits (386), Expect = 2e-36
Identities = 77/89 (86%), Positives = 85/89 (94%)
Frame = -3
Query: 594 GNLDEEVVDEVIAISSDEAVETAKQVALQEGLLVGISSGAAAAAALQVGKRPENAGKLIA 415
GNLD++V+DEVI ISSDEAVETAKQ+ALQEGLLVGISSGAAA AA+QVGKRPENAGKLI
Sbjct: 297 GNLDQDVMDEVIEISSDEAVETAKQLALQEGLLVGISSGAAALAAIQVGKRPENAGKLIG 356
Query: 414 VVFPSFGERYLSTILFQSIREECENMQPE 328
VVFPS+GERYLS+ILFQSIREECE M+PE
Sbjct: 357 VVFPSYGERYLSSILFQSIREECEKMKPE 385
>dbj|BAB20863.1| plastidic cysteine synthase 2 [Solanum tuberosum]
Length = 376
Score = 153 bits (386), Expect = 2e-36
Identities = 77/89 (86%), Positives = 85/89 (94%)
Frame = -3
Query: 594 GNLDEEVVDEVIAISSDEAVETAKQVALQEGLLVGISSGAAAAAALQVGKRPENAGKLIA 415
GNLD++V+DEVI ISSDEAVETAKQ+ALQEGLLVGISSGAAA AA+QVGKRPENAGKLI
Sbjct: 287 GNLDQDVMDEVIEISSDEAVETAKQLALQEGLLVGISSGAAALAAIQVGKRPENAGKLIG 346
Query: 414 VVFPSFGERYLSTILFQSIREECENMQPE 328
VVFPS+GERYLS+ILFQSIREECE M+PE
Sbjct: 347 VVFPSYGERYLSSILFQSIREECEKMKPE 375
>dbj|BAC57641.1| putative plastidic cysteine synthase 1 [Oryza sativa (japonica
cultivar-group)]
Length = 409
Score = 153 bits (386), Expect = 2e-36
Identities = 77/89 (86%), Positives = 84/89 (93%)
Frame = -3
Query: 591 NLDEEVVDEVIAISSDEAVETAKQVALQEGLLVGISSGAAAAAALQVGKRPENAGKLIAV 412
NLD EV+DEVI ISSDEAVETAKQ+ALQEGLLVGISSGAAAAAA++V KRPENAGKL+ V
Sbjct: 321 NLDSEVLDEVIEISSDEAVETAKQLALQEGLLVGISSGAAAAAAIKVAKRPENAGKLVVV 380
Query: 411 VFPSFGERYLSTILFQSIREECENMQPEP 325
VFPSFGERYLS+ILFQSIREECE +QPEP
Sbjct: 381 VFPSFGERYLSSILFQSIREECEKLQPEP 409
>sp|O81155|CYSL_SOLTU Cysteine synthase, chloroplast precursor (O-acetylserine
sulfhydrylase) (O-acetylserine (Thiol)-lyase) (CSase B)
(CS-B) (OAS-TL B) gi|7436944|pir||T07002 cysteine
synthase (EC 4.2.99.8) precursor, chloroplast - potato
gi|3290022|gb|AAC25636.1| cysteine synthase; CS-B;
O-acetylserine (thiol) lyase; plastidic isoform [Solanum
tuberosum]
Length = 386
Score = 149 bits (377), Expect = 2e-35
Identities = 75/89 (84%), Positives = 84/89 (94%)
Frame = -3
Query: 594 GNLDEEVVDEVIAISSDEAVETAKQVALQEGLLVGISSGAAAAAALQVGKRPENAGKLIA 415
GNLD++V+DEVI ISSDEAVETA+ +ALQEGLLVGISSGAAA AA+QVGKRPENAGKLI
Sbjct: 297 GNLDQDVMDEVIEISSDEAVETARTLALQEGLLVGISSGAAALAAIQVGKRPENAGKLIG 356
Query: 414 VVFPSFGERYLSTILFQSIREECENMQPE 328
VVFPS+GERYLS+ILFQSIREECE M+PE
Sbjct: 357 VVFPSYGERYLSSILFQSIREECEKMKPE 385
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 472,864,729
Number of Sequences: 1393205
Number of extensions: 9603954
Number of successful extensions: 28315
Number of sequences better than 10.0: 441
Number of HSP's better than 10.0 without gapping: 27024
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28156
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23140425222
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
