Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004553A_C01 KMC004553A_c01
(495 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO42292.1| unknown protein [Arabidopsis thaliana] 50 2e-05
ref|NP_174426.1| hypothetical protein; protein id: At1g31410.1 [... 50 2e-05
ref|NP_189404.1| unknown protein; protein id: At3g27670.1 [Arabi... 32 5.0
dbj|BAB02691.1| gene_id:MGF10.8~unknown protein [Arabidopsis tha... 32 5.0
>gb|AAO42292.1| unknown protein [Arabidopsis thaliana]
Length = 524
Score = 49.7 bits (117), Expect = 2e-05
Identities = 24/56 (42%), Positives = 34/56 (59%)
Frame = -2
Query: 494 VPGASPSLF*GHSAHVSVEFNKGRPRLNTNLIEGAPPPRPLYERCEFVEPLSNSTV 327
+PGASPS G + K R +L+TNL+ G PPP + +CEF+EPL +T+
Sbjct: 424 IPGASPSALDGPLVTEPEKTKKDRTKLDTNLVTGVPPPE-ILSKCEFLEPLPEATL 478
>ref|NP_174426.1| hypothetical protein; protein id: At1g31410.1 [Arabidopsis
thaliana] gi|25511728|pir||A86440 58.5K hypothetical
protein - Arabidopsis thaliana
gi|12322546|gb|AAG51275.1|AC027135_16 hypothetical
protein [Arabidopsis thaliana]
Length = 526
Score = 49.7 bits (117), Expect = 2e-05
Identities = 24/56 (42%), Positives = 34/56 (59%)
Frame = -2
Query: 494 VPGASPSLF*GHSAHVSVEFNKGRPRLNTNLIEGAPPPRPLYERCEFVEPLSNSTV 327
+PGASPS G + K R +L+TNL+ G PPP + +CEF+EPL +T+
Sbjct: 426 IPGASPSALDGPLVTEPEKTKKDRTKLDTNLVTGVPPPE-ILSKCEFLEPLPEATL 480
>ref|NP_189404.1| unknown protein; protein id: At3g27670.1 [Arabidopsis thaliana]
Length = 1815
Score = 31.6 bits (70), Expect = 5.0
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = -2
Query: 362 CEFVEPLSNSTVLRLPLPD 306
CEF+EP N T+LR+PL D
Sbjct: 163 CEFLEPFLNFTILRIPLSD 181
>dbj|BAB02691.1| gene_id:MGF10.8~unknown protein [Arabidopsis thaliana]
Length = 1868
Score = 31.6 bits (70), Expect = 5.0
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = -2
Query: 362 CEFVEPLSNSTVLRLPLPD 306
CEF+EP N T+LR+PL D
Sbjct: 163 CEFLEPFLNFTILRIPLSD 181
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 430,789,744
Number of Sequences: 1393205
Number of extensions: 9236149
Number of successful extensions: 22338
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 21668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22325
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14493193850
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
