Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004551A_C01 KMC004551A_c01
(553 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_200486.1| pollen specific protein SF21; protein id: At5g5... 150 1e-35
ref|NP_179552.1| putative SF21 protein {Helianthus annuus}; pro... 145 4e-34
dbj|BAB12700.1| putative pollen specific protein SF21 [Oryza sat... 142 4e-33
ref|NP_568251.1| putative protein; protein id: At5g11790.1, supp... 125 4e-28
sp|O23969|SF21_HELAN Pollen specific protein SF21 gi|7489336|pir... 124 8e-28
>ref|NP_200486.1| pollen specific protein SF21; protein id: At5g56750.1, supported by
cDNA: 36495., supported by cDNA: gi_15215797, supported
by cDNA: gi_19699253 [Arabidopsis thaliana]
gi|10176779|dbj|BAB09893.1| pollen specific protein SF21
[Arabidopsis thaliana] gi|15215798|gb|AAK91444.1|
AT5g56750/MIK19_22 [Arabidopsis thaliana]
gi|19699254|gb|AAL90993.1| AT5g56750/MIK19_22
[Arabidopsis thaliana] gi|21593137|gb|AAM65086.1| pollen
specific protein SF21 [Arabidopsis thaliana]
Length = 346
Score = 150 bits (378), Expect = 1e-35
Identities = 72/79 (91%), Positives = 76/79 (96%)
Frame = -1
Query: 553 DRRFSALVEVQACGSMVTEEQPHAMLIPLEYFLMGYGLYRPSQFSDSPRSPLSPSCISPE 374
DR + ALVEVQACGSMVTEEQPHAMLIP+EYFLMGYGLYRPS FS+SPRSPLSPSCISPE
Sbjct: 266 DRGYCALVEVQACGSMVTEEQPHAMLIPMEYFLMGYGLYRPSLFSESPRSPLSPSCISPE 325
Query: 373 LLSPESMGLKLKPIKTRVS 317
LLSPESMGLKLKPIKTR+S
Sbjct: 326 LLSPESMGLKLKPIKTRIS 344
>ref|NP_179552.1| putative SF21 protein {Helianthus annuus}; protein id: At2g19620.1
[Arabidopsis thaliana] gi|25411917|pir||A84579 probable
SF21 protein (Helianthus annuus) [imported] -
Arabidopsis thaliana gi|4191791|gb|AAD10160.1| putative
SF21 protein {Helianthus annuus} [Arabidopsis thaliana]
Length = 347
Score = 145 bits (365), Expect = 4e-34
Identities = 68/78 (87%), Positives = 75/78 (95%)
Frame = -1
Query: 553 DRRFSALVEVQACGSMVTEEQPHAMLIPLEYFLMGYGLYRPSQFSDSPRSPLSPSCISPE 374
DR++SALVEVQACGSMVTEEQPHAMLIP+E+F MG+GLYRP + SDSPRSPLSPSCISPE
Sbjct: 266 DRKYSALVEVQACGSMVTEEQPHAMLIPMEFFFMGFGLYRPGRVSDSPRSPLSPSCISPE 325
Query: 373 LLSPESMGLKLKPIKTRV 320
LLSPES+GLKLKPIKTRV
Sbjct: 326 LLSPESLGLKLKPIKTRV 343
>dbj|BAB12700.1| putative pollen specific protein SF21 [Oryza sativa (japonica
cultivar-group)]
Length = 356
Score = 142 bits (357), Expect = 4e-33
Identities = 67/79 (84%), Positives = 73/79 (91%)
Frame = -1
Query: 553 DRRFSALVEVQACGSMVTEEQPHAMLIPLEYFLMGYGLYRPSQFSDSPRSPLSPSCISPE 374
DRR+ ALVEVQACGS+VTEEQPHAMLIP+EYFLMGYGLYRPSQ SPRS L+P CISPE
Sbjct: 275 DRRYCALVEVQACGSLVTEEQPHAMLIPMEYFLMGYGLYRPSQLDSSPRSTLNPFCISPE 334
Query: 373 LLSPESMGLKLKPIKTRVS 317
LLSPESMG+KLKPIKTR+S
Sbjct: 335 LLSPESMGVKLKPIKTRIS 353
>ref|NP_568251.1| putative protein; protein id: At5g11790.1, supported by cDNA:
gi_13605683, supported by cDNA: gi_16323345 [Arabidopsis
thaliana] gi|13605684|gb|AAK32835.1|AF361823_1
AT5g11790/T22P22_180 [Arabidopsis thaliana]
gi|16323346|gb|AAL15386.1| AT5g11790/T22P22_180
[Arabidopsis thaliana]
Length = 344
Score = 125 bits (313), Expect = 4e-28
Identities = 62/79 (78%), Positives = 72/79 (90%)
Frame = -1
Query: 553 DRRFSALVEVQACGSMVTEEQPHAMLIPLEYFLMGYGLYRPSQFSDSPRSPLSPSCISPE 374
DRR+ ALVEVQ GS+V+EEQP AM+IP+EYFLMGYGLYRP+Q S SPRSPLSP+ ISPE
Sbjct: 266 DRRYGALVEVQGSGSLVSEEQPQAMIIPMEYFLMGYGLYRPTQ-SVSPRSPLSPTRISPE 324
Query: 373 LLSPESMGLKLKPIKTRVS 317
LLSPE+MGLKLKPIKTR++
Sbjct: 325 LLSPENMGLKLKPIKTRLA 343
>sp|O23969|SF21_HELAN Pollen specific protein SF21 gi|7489336|pir||T13993 hypothetical
protein sf21 - common sunflower
gi|2655926|emb|CAA70260.1| sf21 [Helianthus annuus]
Length = 352
Score = 124 bits (311), Expect = 8e-28
Identities = 60/76 (78%), Positives = 66/76 (85%)
Frame = -1
Query: 541 SALVEVQACGSMVTEEQPHAMLIPLEYFLMGYGLYRPSQFSDSPRSPLSPSCISPELLSP 362
SALVEV ACGSMVT+EQPHAMLIPLE FL G+GLYRP ++S+SPRSPL PS I PELL P
Sbjct: 270 SALVEVHACGSMVTQEQPHAMLIPLENFLKGFGLYRPCRYSNSPRSPLGPSSIDPELLYP 329
Query: 361 ESMGLKLKPIKTRVSP 314
E MGLKL+PIK RVSP
Sbjct: 330 EKMGLKLRPIKLRVSP 345
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 496,738,887
Number of Sequences: 1393205
Number of extensions: 10873544
Number of successful extensions: 36799
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 32172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34612
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19234190289
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
