Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004549A_C01 KMC004549A_c01
(469 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||S68805 pectin acetylesterase (EC 3.1.1.-) precursor - mung ... 166 8e-41
ref|NP_193677.2| pectinacetylesterase family; protein id: At4g19... 128 3e-29
ref|NP_198019.2| pectinacetylesterase, putative; protein id: At5... 107 6e-23
pir||T01197 pectin acetylesterase homolog F21E10.11 - Arabidopsi... 107 6e-23
ref|NP_567585.1| pectinacetylesterase, putative; protein id: At4... 104 4e-22
>pir||S68805 pectin acetylesterase (EC 3.1.1.-) precursor - mung bean
gi|1431629|emb|CAA67728.1| pectinacetylesterase
precursor [Vigna radiata]
Length = 399
Score = 166 bits (421), Expect = 8e-41
Identities = 71/95 (74%), Positives = 83/95 (86%)
Frame = -1
Query: 469 SSNQLTVMQGFRTEFLKAISVVENSPSKGMFIDGCYSHCQTGMQETWMRSDSPVLANTTI 290
SSNQL+ MQ FRT+FL+A V NSPSKG FIDGCY+HCQTG QETW+R+DSPVL +TTI
Sbjct: 300 SSNQLSAMQVFRTDFLRAFGAVGNSPSKGHFIDGCYAHCQTGTQETWLRNDSPVLGSTTI 359
Query: 289 AKAVGDWFYERRSFSQIDCSYPCNPTCHNRVFDDN 185
AKAVGDW+Y+R+ F QIDC+YPCNPTCHNR+FD N
Sbjct: 360 AKAVGDWYYDRKPFKQIDCAYPCNPTCHNRIFDQN 394
>ref|NP_193677.2| pectinacetylesterase family; protein id: At4g19420.1 [Arabidopsis
thaliana]
Length = 397
Score = 128 bits (321), Expect = 3e-29
Identities = 56/90 (62%), Positives = 67/90 (74%)
Frame = -1
Query: 463 NQLTVMQGFRTEFLKAISVVENSPSKGMFIDGCYSHCQTGMQETWMRSDSPVLANTTIAK 284
+Q+ VMQ FR EFL A+ + S S+GMFID CY+HCQT Q +W DSP+L TTIAK
Sbjct: 300 SQIKVMQDFRLEFLSAVIGLGRSSSRGMFIDSCYTHCQTETQTSWFWQDSPILNRTTIAK 359
Query: 283 AVGDWFYERRSFSQIDCSYPCNPTCHNRVF 194
AVGDW Y+R F +IDC YPCNPTCH+RVF
Sbjct: 360 AVGDWVYDRTLFQKIDCPYPCNPTCHHRVF 389
>ref|NP_198019.2| pectinacetylesterase, putative; protein id: At5g26665.1
[Arabidopsis thaliana]
Length = 423
Score = 107 bits (267), Expect = 6e-23
Identities = 43/89 (48%), Positives = 60/89 (67%)
Frame = -1
Query: 460 QLTVMQGFRTEFLKAISVVENSPSKGMFIDGCYSHCQTGMQETWMRSDSPVLANTTIAKA 281
Q+ +QGFR + L+A+S NS G+FI+ C++HCQT Q+TW DSPV+ +A A
Sbjct: 334 QIRFLQGFRNQMLRAVSGFSNSKKNGLFINSCFAHCQTERQDTWFADDSPVIHKKAVAIA 393
Query: 280 VGDWFYERRSFSQIDCSYPCNPTCHNRVF 194
VGDW+++R IDC YPC+ +CHN VF
Sbjct: 394 VGDWYFDRAEVKLIDCPYPCDRSCHNLVF 422
>pir||T01197 pectin acetylesterase homolog F21E10.11 - Arabidopsis thaliana
gi|3047082|gb|AAC13595.1| similar to Vigna radiata
pectinacetylesterase precursor (GB:X99348) [Arabidopsis
thaliana]
Length = 422
Score = 107 bits (267), Expect = 6e-23
Identities = 43/89 (48%), Positives = 60/89 (67%)
Frame = -1
Query: 460 QLTVMQGFRTEFLKAISVVENSPSKGMFIDGCYSHCQTGMQETWMRSDSPVLANTTIAKA 281
Q+ +QGFR + L+A+S NS G+FI+ C++HCQT Q+TW DSPV+ +A A
Sbjct: 333 QIRFLQGFRNQMLRAVSGFSNSKKNGLFINSCFAHCQTERQDTWFADDSPVIHKKAVAIA 392
Query: 280 VGDWFYERRSFSQIDCSYPCNPTCHNRVF 194
VGDW+++R IDC YPC+ +CHN VF
Sbjct: 393 VGDWYFDRAEVKLIDCPYPCDRSCHNLVF 421
>ref|NP_567585.1| pectinacetylesterase, putative; protein id: At4g19410.1, supported
by cDNA: 34674., supported by cDNA: gi_15450901,
supported by cDNA: gi_17978690 [Arabidopsis thaliana]
gi|15450902|gb|AAK96722.1| putative pectinacetylesterase
protein [Arabidopsis thaliana]
gi|17978691|gb|AAL47339.1| putative pectinacetylesterase
protein [Arabidopsis thaliana]
gi|21592972|gb|AAM64921.1| putative pectinacetylesterase
protein [Arabidopsis thaliana]
Length = 391
Score = 104 bits (260), Expect = 4e-22
Identities = 45/88 (51%), Positives = 63/88 (71%), Gaps = 1/88 (1%)
Frame = -1
Query: 469 SSNQLTVMQGFRTEFLKAISVVENSPSKGMFIDGCYSHCQTGMQETWMRSDSPVLANTTI 290
S+ QL +QGFR + ++A+S V ++PS+G+F+D C++HCQ G +W P +ANT I
Sbjct: 297 SAAQLKTVQGFRDQMMRALSPVHSTPSRGLFLDSCHAHCQGGSAASWSGDKGPQVANTRI 356
Query: 289 AKAVGDWFYERRSFSQIDCSYP-CNPTC 209
AKAVG+WFY R +F +IDC P CNPTC
Sbjct: 357 AKAVGNWFYGRSAFQKIDCPSPTCNPTC 384
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 378,969,186
Number of Sequences: 1393205
Number of extensions: 7667657
Number of successful extensions: 16276
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 16008
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16262
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 12232797444
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
