Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004548A_C01 KMC004548A_c01
(666 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T50602 ribosomal protein L21 [imported] - rice gi|3885884|g... 264 9e-70
gb|AAK27801.1|AC022457_4 60S ribosomal protein L21 [Oryza sativa... 264 9e-70
ref|NP_563847.1| putative 60S ribosomal protein L21; protein id:... 249 2e-65
ref|NP_564724.1| 60S ribosomal protein L21, putative; protein id... 248 4e-65
ref|NP_683290.1| similar to putative 60S ribosomal protein L21; ... 171 8e-42
>pir||T50602 ribosomal protein L21 [imported] - rice gi|3885884|gb|AAC78102.1|
60S ribosomal protein L21 [Oryza sativa]
Length = 164
Score = 264 bits (674), Expect = 9e-70
Identities = 124/134 (92%), Positives = 132/134 (97%)
Frame = -1
Query: 666 LRTYRIGDYVDVRVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEVNKQVGNRIIRKRIH 487
LRTY+IG++VDV+VNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVE+NKQVGNRIIRKRIH
Sbjct: 31 LRTYKIGEHVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIRKRIH 90
Query: 486 VRVEHVMPSRCTEEFRLRKVKNDQLKAEAKAKGEVISTKRQPAGPKPGFMVEGATLETVT 307
VRVEHV PSRCTEEFRLRK+KNDQLKA+AKA+GEVISTKRQP GPKPGFMVEGATLETVT
Sbjct: 91 VRVEHVQPSRCTEEFRLRKIKNDQLKADAKARGEVISTKRQPQGPKPGFMVEGATLETVT 150
Query: 306 PIPYDVVNDLKGGY 265
PIPYDVVNDLKGGY
Sbjct: 151 PIPYDVVNDLKGGY 164
>gb|AAK27801.1|AC022457_4 60S ribosomal protein L21 [Oryza sativa (japonica cultivar-group)]
Length = 164
Score = 264 bits (674), Expect = 9e-70
Identities = 124/134 (92%), Positives = 132/134 (97%)
Frame = -1
Query: 666 LRTYRIGDYVDVRVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEVNKQVGNRIIRKRIH 487
LRTY+IG++VDV+VNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVE+NKQVGNRIIRKRIH
Sbjct: 31 LRTYKIGEHVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIRKRIH 90
Query: 486 VRVEHVMPSRCTEEFRLRKVKNDQLKAEAKAKGEVISTKRQPAGPKPGFMVEGATLETVT 307
VRVEHV PSRCTEEFRLRK+KNDQLKA+AKA+GEVISTKRQP GPKPGFMVEGATLETVT
Sbjct: 91 VRVEHVQPSRCTEEFRLRKIKNDQLKADAKARGEVISTKRQPQGPKPGFMVEGATLETVT 150
Query: 306 PIPYDVVNDLKGGY 265
PIPYDVVNDLKGGY
Sbjct: 151 PIPYDVVNDLKGGY 164
>ref|NP_563847.1| putative 60S ribosomal protein L21; protein id: At1g09590.1,
supported by cDNA: gi_13877928, supported by cDNA:
gi_16323461 [Arabidopsis thaliana]
gi|18391054|ref|NP_563849.1| putative 60S ribosomal
protein L21; protein id: At1g09690.1, supported by cDNA:
gi_16649106, supported by cDNA: gi_20148654 [Arabidopsis
thaliana] gi|2851508|sp|Q43291|RL21_ARATH 60S ribosomal
protein L21 gi|25295366|pir||G86230 hypothetical protein
[imported] - Arabidopsis thaliana
gi|2160162|gb|AAB60725.1| Similar to ribosomal protein
L21 (gb|L38826). ESTs gb|AA395597,gb|ATTS5197 come from
this gene. [Arabidopsis thaliana]
gi|3482935|gb|AAC33220.1| Putative ribosomal protein L21
[Arabidopsis thaliana]
gi|13877929|gb|AAK44042.1|AF370227_1 putative 60S
ribosomal protein L21 [Arabidopsis thaliana]
gi|16323462|gb|AAL15225.1| putative 60S ribosomal
protein L21 [Arabidopsis thaliana]
gi|16649107|gb|AAL24405.1| Similar to ribosomal protein
L21 [Arabidopsis thaliana] gi|20148655|gb|AAM10218.1|
similar to ribosomal protein L21 [Arabidopsis thaliana]
gi|23397265|gb|AAN31914.1| putative 60S ribosomal
protein L21 [Arabidopsis thaliana]
Length = 164
Score = 249 bits (637), Expect = 2e-65
Identities = 115/134 (85%), Positives = 125/134 (92%)
Frame = -1
Query: 666 LRTYRIGDYVDVRVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEVNKQVGNRIIRKRIH 487
LRT+++GDYVDV+VNGA+HKGMPHKFYHGRTGR+WNVTKRA+GVEVNKQ+GNRIIRKRIH
Sbjct: 31 LRTFKVGDYVDVKVNGAIHKGMPHKFYHGRTGRIWNVTKRAVGVEVNKQIGNRIIRKRIH 90
Query: 486 VRVEHVMPSRCTEEFRLRKVKNDQLKAEAKAKGEVISTKRQPAGPKPGFMVEGATLETVT 307
VRVEHV SRC EEF+LRK KND+LKA AKA GE ISTKRQP GPKPGFMVEG TLETVT
Sbjct: 91 VRVEHVQQSRCAEEFKLRKKKNDELKAAAKANGETISTKRQPKGPKPGFMVEGMTLETVT 150
Query: 306 PIPYDVVNDLKGGY 265
PIPYDVVNDLKGGY
Sbjct: 151 PIPYDVVNDLKGGY 164
>ref|NP_564724.1| 60S ribosomal protein L21, putative; protein id: At1g57660.1,
supported by cDNA: 28545., supported by cDNA:
gi_15292812, supported by cDNA: gi_20258868 [Arabidopsis
thaliana] gi|18406104|ref|NP_564726.1| 60S ribosomal
protein L21, putative; protein id: At1g57860.1
[Arabidopsis thaliana] gi|25295367|pir||H96610 probable
60S ribosomal protein L21 [imported] - Arabidopsis
thaliana gi|11079525|gb|AAG29235.1|AC079732_6 60S
ribosomal protein L21, putative [Arabidopsis thaliana]
gi|12321346|gb|AAG50742.1|AC079733_10 60S ribosomal
protein L21, putative [Arabidopsis thaliana]
gi|15292813|gb|AAK92775.1| putative 60S ribosomal
protein L21 [Arabidopsis thaliana]
gi|20258869|gb|AAM14106.1| putative 60S ribosomal
protein L21 [Arabidopsis thaliana]
gi|21555617|gb|AAM63899.1| 60S ribosomal protein L21,
putative [Arabidopsis thaliana]
gi|28466903|gb|AAO44060.1| At1g57860 [Arabidopsis
thaliana]
Length = 164
Score = 248 bits (634), Expect = 4e-65
Identities = 114/134 (85%), Positives = 126/134 (93%)
Frame = -1
Query: 666 LRTYRIGDYVDVRVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEVNKQVGNRIIRKRIH 487
LRT+++GDYVDV+VNGA+HKGMPHKFYHGRTGR+WNVTKRA+GVEVNKQ+GNRIIRKRIH
Sbjct: 31 LRTFKVGDYVDVKVNGAIHKGMPHKFYHGRTGRIWNVTKRAVGVEVNKQIGNRIIRKRIH 90
Query: 486 VRVEHVMPSRCTEEFRLRKVKNDQLKAEAKAKGEVISTKRQPAGPKPGFMVEGATLETVT 307
VRVEHV SRC EEF+LRK +ND LKA+AKA+GE ISTKRQP GPKPGFMVEG TLETVT
Sbjct: 91 VRVEHVQQSRCAEEFKLRKKQNDVLKADAKARGETISTKRQPKGPKPGFMVEGMTLETVT 150
Query: 306 PIPYDVVNDLKGGY 265
PIPYDVVNDLKGGY
Sbjct: 151 PIPYDVVNDLKGGY 164
>ref|NP_683290.1| similar to putative 60S ribosomal protein L21; protein id:
At1g09486.1 [Arabidopsis thaliana]
Length = 138
Score = 171 bits (433), Expect = 8e-42
Identities = 86/134 (64%), Positives = 99/134 (73%)
Frame = -1
Query: 666 LRTYRIGDYVDVRVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEVNKQVGNRIIRKRIH 487
L T+++GDYVDV+VNGA+HKG+PHKFYH R GR+WN+TKRA+GVEVNKQ
Sbjct: 25 LITFKVGDYVDVKVNGAIHKGIPHKFYHSRIGRIWNLTKRAVGVEVNKQ----------- 73
Query: 486 VRVEHVMPSRCTEEFRLRKVKNDQLKAEAKAKGEVISTKRQPAGPKPGFMVEGATLETVT 307
SRC +EF LRK +ND K AKA+ E ISTKRQP GPKP FMVEG TLETVT
Sbjct: 74 --------SRCDDEFSLRKKQNDVFKTAAKARCETISTKRQPKGPKPCFMVEGMTLETVT 125
Query: 306 PIPYDVVNDLKGGY 265
PIP +VVNDLKGGY
Sbjct: 126 PIP-NVVNDLKGGY 138
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 596,230,706
Number of Sequences: 1393205
Number of extensions: 13805976
Number of successful extensions: 52966
Number of sequences better than 10.0: 322
Number of HSP's better than 10.0 without gapping: 46995
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52671
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28855580904
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
