Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004546A_C01 KMC004546A_c01
(511 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_200492.1| F-box protein; protein id: At5g56810.1 [Arabido... 54 1e-06
ref|NP_194365.1| F-box protein; protein id: At4g26350.1 [Arabido... 54 1e-06
ref|NP_200455.1| F-box protein; protein id: At5g56440.1 [Arabido... 54 1e-06
gb|AAL09802.1| AT5g56420/MCD7_18 [Arabidopsis thaliana] 52 3e-06
ref|NP_200453.1| F-box protein; protein id: At5g56420.1, support... 52 3e-06
>ref|NP_200492.1| F-box protein; protein id: At5g56810.1 [Arabidopsis thaliana]
gi|10176785|dbj|BAB09899.1|
emb|CAB62008.1~gene_id:MIK19.28~similar to unknown
protein [Arabidopsis thaliana]
Length = 435
Score = 53.9 bits (128), Expect = 1e-06
Identities = 32/79 (40%), Positives = 45/79 (56%)
Frame = -2
Query: 444 DPGFIPKCFSTHLRKCFIKGYAGVDCQMRFARYVLQNATLLRSLIICSRYSQNHQRKLEM 265
+P +P+C S HL GYAG ++ A YVL+NA L++ I S YS+ + L M
Sbjct: 357 EPSSVPECLSFHLETFQWIGYAGTFEEIAAAVYVLKNARCLKNATI-SLYSRGTENGLMM 415
Query: 264 ITELASYPRSSAVCELLFK 208
I EL S + S +C+LL K
Sbjct: 416 IKELESMSKGSIMCQLLVK 434
>ref|NP_194365.1| F-box protein; protein id: At4g26350.1 [Arabidopsis thaliana]
gi|7487425|pir||T06019 hypothetical protein T25K17.160 -
Arabidopsis thaliana gi|4539431|emb|CAB38964.1| putative
protein [Arabidopsis thaliana]
gi|7269487|emb|CAB79490.1| putative protein [Arabidopsis
thaliana]
Length = 431
Score = 53.9 bits (128), Expect = 1e-06
Identities = 34/100 (34%), Positives = 48/100 (48%)
Frame = -2
Query: 510 NHCPKLQTVVFDIRLDDDEVWPDPGFIPKCFSTHLRKCFIKGYAGVDCQMRFARYVLQNA 331
+HC +L + L+ W P +P C + L+ GY G +YVL+NA
Sbjct: 335 DHCRELPS------LETPACWKRPSSVPACLLSSLQAFTWSGYKGRQGDKEVVKYVLRNA 388
Query: 330 TLLRSLIICSRYSQNHQRKLEMITELASYPRSSAVCELLF 211
T L+ I S+ S + K M+ ELAS P S C+LLF
Sbjct: 389 TGLKKRIFISK-SNDFGEKFCMLQELASVPTPSPSCQLLF 427
>ref|NP_200455.1| F-box protein; protein id: At5g56440.1 [Arabidopsis thaliana]
gi|10177843|dbj|BAB11272.1|
emb|CAB62440.1~gene_id:MCD7.20~similar to unknown
protein [Arabidopsis thaliana]
Length = 430
Score = 53.5 bits (127), Expect = 1e-06
Identities = 34/118 (28%), Positives = 52/118 (43%), Gaps = 18/118 (15%)
Frame = -2
Query: 510 NHCPKLQTVVFDIR------------------LDDDEVWPDPGFIPKCFSTHLRKCFIKG 385
NH PKL+ + F+ R +D W P +PKC + L
Sbjct: 312 NHTPKLRVLRFEQRQAKFYQLLDPLKRCCSSSVDVQTQWEQPSSVPKCLISSLETVEWID 371
Query: 384 YAGVDCQMRFARYVLQNATLLRSLIICSRYSQNHQRKLEMITELASYPRSSAVCELLF 211
Y G + + + Y+L+N+ L+++ I S S N KL+M+ EL+S R C L F
Sbjct: 372 YKGREVEKKVVMYLLENSRQLKTMAIRSLKSTNDNEKLKMLQELSSIHRICTKCGLSF 429
>gb|AAL09802.1| AT5g56420/MCD7_18 [Arabidopsis thaliana]
Length = 401
Score = 52.4 bits (124), Expect = 3e-06
Identities = 29/80 (36%), Positives = 43/80 (53%)
Frame = -2
Query: 450 WPDPGFIPKCFSTHLRKCFIKGYAGVDCQMRFARYVLQNATLLRSLIICSRYSQNHQRKL 271
W P +PKC HL + Y G Q A ++L++A L++ II + + K
Sbjct: 322 WKQPA-LPKCLLFHLETFKWELYEGSQKQKEVATFILKHAIRLKTAIISPKPTSTLLEKH 380
Query: 270 EMITELASYPRSSAVCELLF 211
EM+ +L+S PR S+ CELLF
Sbjct: 381 EMLKDLSSSPRGSSTCELLF 400
>ref|NP_200453.1| F-box protein; protein id: At5g56420.1, supported by cDNA:
gi_15982910 [Arabidopsis thaliana]
gi|10177841|dbj|BAB11270.1|
emb|CAB62440.1~gene_id:MCD7.18~similar to unknown
protein [Arabidopsis thaliana]
Length = 422
Score = 52.4 bits (124), Expect = 3e-06
Identities = 29/80 (36%), Positives = 43/80 (53%)
Frame = -2
Query: 450 WPDPGFIPKCFSTHLRKCFIKGYAGVDCQMRFARYVLQNATLLRSLIICSRYSQNHQRKL 271
W P +PKC HL + Y G Q A ++L++A L++ II + + K
Sbjct: 343 WKQPA-LPKCLLFHLETFKWELYEGSQKQKEVATFILKHAIRLKTAIISPKPTSTLLEKH 401
Query: 270 EMITELASYPRSSAVCELLF 211
EM+ +L+S PR S+ CELLF
Sbjct: 402 EMLKDLSSSPRGSSTCELLF 421
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 397,943,595
Number of Sequences: 1393205
Number of extensions: 7686511
Number of successful extensions: 17965
Number of sequences better than 10.0: 106
Number of HSP's better than 10.0 without gapping: 17481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17936
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15942513235
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
