Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004545A_C01 KMC004545A_c01
(730 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_213526.1| putative protein [Aquifex aeolicus] gi|7517643|... 33 5.4
ref|NP_792912.1| Cof-like hydrolase family protein [Pseudomonas ... 32 9.2
>ref|NP_213526.1| putative protein [Aquifex aeolicus] gi|7517643|pir||B70367
hypothetical protein aq_765 - Aquifex aeolicus
gi|2983337|gb|AAC06926.1| putative protein [Aquifex
aeolicus VF5]
Length = 480
Score = 32.7 bits (73), Expect = 5.4
Identities = 25/81 (30%), Positives = 40/81 (48%)
Frame = -3
Query: 677 FFGFRGAKWRDYCDYLFLWDGYTVLNL*WGSVYVKRRGNFGFVSRLPLSCFLKSEVSFQP 498
FF F K R Y ++ GY ++ + ++K + F++ L LS FL + F P
Sbjct: 280 FFAFLSLKKRVYANWAGF--GYYTASILFAYYFLKSPKSLKFLT-LILSAFLTLLLHFTP 336
Query: 497 LY*FMGLECV**SYLLPPRED 435
L+ ++GL LLPP+ D
Sbjct: 337 LFDYLGLR-----NLLPPKRD 352
>ref|NP_792912.1| Cof-like hydrolase family protein [Pseudomonas syringae pv. tomato
str. DC3000] gi|28853540|gb|AAO56607.1| Cof-like
hydrolase family protein [Pseudomonas syringae pv.
tomato str. DC3000]
Length = 272
Score = 32.0 bits (71), Expect = 9.2
Identities = 16/48 (33%), Positives = 25/48 (51%)
Frame = -1
Query: 622 GMDILCLIFSGGVFTSKDGGILALFPDCPSAAF*NLRSASNHYISSWV 479
G+D+ + F+GG T DG +LA P+A L + H ++ WV
Sbjct: 64 GVDLPTVAFNGGTITHPDGSLLAAHRIDPAAVRTCLELFAGHNVAIWV 111
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 631,510,239
Number of Sequences: 1393205
Number of extensions: 13562763
Number of successful extensions: 28158
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 27041
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28134
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 34343566934
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
