Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004543A_C01 KMC004543A_c01
(521 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_565102.1| expressed protein; protein id: At1g75110.1, sup... 145 2e-34
gb|AAM63606.1| unknown [Arabidopsis thaliana] 145 2e-34
ref|NP_564082.1| expressed protein; protein id: At1g19360.1, sup... 135 3e-31
ref|NP_177648.1| unknown protein; protein id: At1g75120.1 [Arabi... 130 9e-30
ref|NP_704174.1| hypothetical protein [Plasmodium falciparum 3D7... 33 1.5
>ref|NP_565102.1| expressed protein; protein id: At1g75110.1, supported by cDNA:
256769., supported by cDNA: gi_14517392, supported by
cDNA: gi_20857365 [Arabidopsis thaliana]
gi|25406411|pir||B96781 unknown protein F9E10.4
[imported] - Arabidopsis thaliana
gi|12323891|gb|AAG51917.1|AC013258_11 unknown protein;
7482-9019 [Arabidopsis thaliana]
gi|14517393|gb|AAK62587.1| At1g75110/F9E10_4
[Arabidopsis thaliana] gi|20857366|gb|AAM26715.1|
At1g75110/F9E10_4 [Arabidopsis thaliana]
Length = 428
Score = 145 bits (367), Expect = 2e-34
Identities = 68/90 (75%), Positives = 77/90 (85%)
Frame = -3
Query: 519 QAVFNEELFYPSHPGYDGLHAARRTMDMYLFMNSKVLFKTVRNDANLSQLKPVIIHVNYP 340
QAVFNE+LFYPSHPGY GLHA++R MDMY FMNSKVLFKTVR + L +LKPVI+H+NY
Sbjct: 339 QAVFNEQLFYPSHPGYTGLHASKRVMDMYEFMNSKVLFKTVRKNQELKKLKPVIVHLNYH 398
Query: 339 PDKLPRMKAVVEYYVNGKLDALKPFPEGSD 250
PDKL RM AVVE+YVNGK DAL FP+GSD
Sbjct: 399 PDKLERMHAVVEFYVNGKQDALDSFPDGSD 428
>gb|AAM63606.1| unknown [Arabidopsis thaliana]
Length = 428
Score = 145 bits (367), Expect = 2e-34
Identities = 68/90 (75%), Positives = 77/90 (85%)
Frame = -3
Query: 519 QAVFNEELFYPSHPGYDGLHAARRTMDMYLFMNSKVLFKTVRNDANLSQLKPVIIHVNYP 340
QAVFNE+LFYPSHPGY GLHA++R MDMY FMNSKVLFKTVR + L +LKPVI+H+NY
Sbjct: 339 QAVFNEQLFYPSHPGYTGLHASKRVMDMYEFMNSKVLFKTVRKNQELKKLKPVIVHLNYH 398
Query: 339 PDKLPRMKAVVEYYVNGKLDALKPFPEGSD 250
PDKL RM AVVE+YVNGK DAL FP+GSD
Sbjct: 399 PDKLERMHAVVEFYVNGKQDALDSFPDGSD 428
>ref|NP_564082.1| expressed protein; protein id: At1g19360.1, supported by cDNA:
41461. [Arabidopsis thaliana]
gi|8778445|gb|AAF79453.1|AC025808_35 F18O14.8
[Arabidopsis thaliana] gi|21593695|gb|AAM65662.1|
unknown [Arabidopsis thaliana]
Length = 428
Score = 135 bits (340), Expect = 3e-31
Identities = 66/91 (72%), Positives = 76/91 (82%), Gaps = 1/91 (1%)
Frame = -3
Query: 519 QAVFNEELFYPSHPGYDGLHAARRTMDMYLFMNSKVLFKTVRNDANL-SQLKPVIIHVNY 343
QAVFNEELFYPSHP Y LHA++R MDMY FMNSKVLFKTVR + L ++KPVI+HVNY
Sbjct: 338 QAVFNEELFYPSHPEYTALHASKRVMDMYEFMNSKVLFKTVRKNHELKKKVKPVIVHVNY 397
Query: 342 PPDKLPRMKAVVEYYVNGKLDALKPFPEGSD 250
PDKL RM+AVVE+YVNGK DAL FP+GS+
Sbjct: 398 HPDKLNRMQAVVEFYVNGKQDALDSFPDGSE 428
>ref|NP_177648.1| unknown protein; protein id: At1g75120.1 [Arabidopsis thaliana]
gi|25406413|pir||C96781 unknown protein F9E10.3
[imported] - Arabidopsis thaliana
gi|12323904|gb|AAG51930.1|AC013258_24 unknown protein;
4711-6345 [Arabidopsis thaliana]
Length = 402
Score = 130 bits (327), Expect = 9e-30
Identities = 61/89 (68%), Positives = 73/89 (81%)
Frame = -3
Query: 519 QAVFNEELFYPSHPGYDGLHAARRTMDMYLFMNSKVLFKTVRNDANLSQLKPVIIHVNYP 340
QAVFN+ LFYPSHPGY GL+A++R MD+Y FMNS+VLFKTVR D + +LKPVIIH+NY
Sbjct: 314 QAVFNQHLFYPSHPGYTGLYASKRVMDVYEFMNSRVLFKTVRKDEEMKKLKPVIIHMNYH 373
Query: 339 PDKLPRMKAVVEYYVNGKLDALKPFPEGS 253
DKL RM+A VE+YVNGK DAL F +GS
Sbjct: 374 SDKLERMQAAVEFYVNGKQDALDRFRDGS 402
>ref|NP_704174.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23498912|emb|CAD50990.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 427
Score = 33.5 bits (75), Expect = 1.5
Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 6/52 (11%)
Frame = +3
Query: 99 YKRNLRV*GKNLENSKDFELAYNKMLQK------KKKKKNYSKTVSNN*HNI 236
Y+RN+++ K ++ FEL YN + QK K+K K+ + +SNN ++I
Sbjct: 165 YRRNIKI--KRAKDEHKFELMYNDIFQKFNHQYNKRKIKDVQQNISNNTYDI 214
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 430,126,855
Number of Sequences: 1393205
Number of extensions: 9259439
Number of successful extensions: 28459
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 25754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28071
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16731298976
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
