Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004542A_C01 KMC004542A_c01
(802 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||JC7234 27k vesicle-associated membrane protein-associated p... 99 9e-20
ref|NP_182039.1| putative VAMP-associated protein; protein id: A... 94 2e-18
pir||T47871 hypothetical protein T4C21.10 - Arabidopsis thaliana... 82 9e-15
gb|AAM63134.1| putative VAMP-associated protein [Arabidopsis tha... 82 9e-15
ref|NP_567101.1| putative protein; protein id: At3g60600.1, supp... 82 9e-15
>pir||JC7234 27k vesicle-associated membrane protein-associated protein -
curled-leaved tobacco gi|6688926|emb|CAB65313.1| VAP27
[Nicotiana plumbaginifolia]
Length = 240
Score = 98.6 bits (244), Expect = 9e-20
Identities = 49/89 (55%), Positives = 67/89 (75%)
Frame = -2
Query: 801 GNVNVSDSATIARGFTERHEATDKSAEAKALITRLTEEKSNAIQQTNKLRQELDLLRRES 622
G VN S+ I+R + E+ D S+E KALI++LTEEK + IQQ NKL+QEL LLRRE
Sbjct: 155 GAVNTSEFNNISRAYNEQQ---DSSSETKALISKLTEEKISVIQQNNKLQQELALLRRER 211
Query: 621 NKNRGGVSMLIVILVGLLGIVMGYLMKKT 535
N +RGG+ + V+++GLLGI++GYL+KKT
Sbjct: 212 NSSRGGIPTIYVLIIGLLGIILGYLLKKT 240
>ref|NP_182039.1| putative VAMP-associated protein; protein id: At2g45140.1,
supported by cDNA: 6457., supported by cDNA: gi_20260229
[Arabidopsis thaliana] gi|25363150|pir||H84886 probable
VAMP-associated protein [imported] - Arabidopsis
thaliana gi|20260230|gb|AAM13013.1| putative
VAMP-associated protein [Arabidopsis thaliana]
gi|21594019|gb|AAM65937.1| putative VAMP-associated
protein [Arabidopsis thaliana]
Length = 239
Score = 94.4 bits (233), Expect = 2e-18
Identities = 45/89 (50%), Positives = 68/89 (75%), Gaps = 1/89 (1%)
Frame = -2
Query: 798 NVNVSDSATIARGFTERHEATDKSAEAKALITRLTEEKSNAIQQTNKLRQELDLLRRESN 619
N N SD R +R +A D S+EA+AL+T+LTEEK++A+Q N+L+QELD LRRES
Sbjct: 151 NGNASDFTAAPRFSADRVDAQDNSSEARALVTKLTEEKNSAVQLNNRLQQELDQLRRESK 210
Query: 618 KNR-GGVSMLIVILVGLLGIVMGYLMKKT 535
+++ GG+ + V+LVGL+G+++GY+MK+T
Sbjct: 211 RSKSGGIPFMYVLLVGLIGLILGYIMKRT 239
>pir||T47871 hypothetical protein T4C21.10 - Arabidopsis thaliana
gi|7329670|emb|CAB82664.1| putative protein [Arabidopsis
thaliana]
Length = 250
Score = 82.0 bits (201), Expect = 9e-15
Identities = 38/68 (55%), Positives = 58/68 (84%), Gaps = 1/68 (1%)
Frame = -2
Query: 735 DKSAEAKALITRLTEEKSNAIQQTNKLRQELDLLRRESNKNR-GGVSMLIVILVGLLGIV 559
+ ++EA+ALIT+LTEEK +AIQ N+L++ELD LRRES K++ GG+ + V+LVGL+G++
Sbjct: 183 ENTSEARALITKLTEEKQSAIQLNNRLQRELDQLRRESKKSQSGGIPFMYVLLVGLIGLI 242
Query: 558 MGYLMKKT 535
+GY+MK+T
Sbjct: 243 LGYIMKRT 250
>gb|AAM63134.1| putative VAMP-associated protein [Arabidopsis thaliana]
Length = 240
Score = 82.0 bits (201), Expect = 9e-15
Identities = 38/68 (55%), Positives = 58/68 (84%), Gaps = 1/68 (1%)
Frame = -2
Query: 735 DKSAEAKALITRLTEEKSNAIQQTNKLRQELDLLRRESNKNR-GGVSMLIVILVGLLGIV 559
+ ++EA+ALIT+LTEEK +AIQ N+L++ELD LRRES K++ GG+ + V+LVGL+G++
Sbjct: 173 ENTSEARALITKLTEEKQSAIQLNNRLQRELDQLRRESKKSQSGGIPFMYVLLVGLIGLI 232
Query: 558 MGYLMKKT 535
+GY+MK+T
Sbjct: 233 LGYIMKRT 240
>ref|NP_567101.1| putative protein; protein id: At3g60600.1, supported by cDNA:
19714., supported by cDNA: gi_17473762 [Arabidopsis
thaliana] gi|17473763|gb|AAL38320.1| putative protein
[Arabidopsis thaliana]
Length = 256
Score = 82.0 bits (201), Expect = 9e-15
Identities = 38/68 (55%), Positives = 58/68 (84%), Gaps = 1/68 (1%)
Frame = -2
Query: 735 DKSAEAKALITRLTEEKSNAIQQTNKLRQELDLLRRESNKNR-GGVSMLIVILVGLLGIV 559
+ ++EA+ALIT+LTEEK +AIQ N+L++ELD LRRES K++ GG+ + V+LVGL+G++
Sbjct: 189 ENTSEARALITKLTEEKQSAIQLNNRLQRELDQLRRESKKSQSGGIPFMYVLLVGLIGLI 248
Query: 558 MGYLMKKT 535
+GY+MK+T
Sbjct: 249 LGYIMKRT 256
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 636,687,219
Number of Sequences: 1393205
Number of extensions: 13169852
Number of successful extensions: 30725
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 29622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30709
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 40616159090
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
