Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004541A_C02 KMC004541A_c02
(604 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9LSU1|PSA5_ORYSA Proteasome subunit alpha type 5 (20S protea... 232 2e-60
sp|Q9M4T8|PSA5_SOYBN Proteasome subunit alpha type 5 (20S protea... 229 3e-59
ref|NP_188046.1| 20S proteasome alpha subunit E2 (PAE2); protein... 224 7e-58
ref|NP_175788.1| 20S proteasome alpha subunit E1 (PAE1); protein... 222 3e-57
emb|CAD10778.1| 20S proteasome subunit alpha V [Physcomitrella p... 196 2e-49
>sp|Q9LSU1|PSA5_ORYSA Proteasome subunit alpha type 5 (20S proteasome alpha subunit E)
(20S proteasome subunit alpha-5)
gi|8671498|dbj|BAA96832.1| alpha 5 subunit of 20S
proteasome [Oryza sativa (japonica cultivar-group)]
Length = 237
Score = 232 bits (592), Expect = 2e-60
Identities = 115/117 (98%), Positives = 116/117 (98%)
Frame = -2
Query: 603 LRFGEGDEESMSRPFGVSLLIAGHDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQ 424
LRFGEGDEESMSRPFGVSLLIAGHDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQ
Sbjct: 121 LRFGEGDEESMSRPFGVSLLIAGHDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQ 180
Query: 423 EQYNKELTLQEAETIALSILKQVMEEKVTPNNVDIAKVSPTYHLYTPAEVEAVISRL 253
EQYNKELTLQEAETIALSILKQVMEEKVTPNNVDIAKVSP YHLYTPAEVEAVI+RL
Sbjct: 181 EQYNKELTLQEAETIALSILKQVMEEKVTPNNVDIAKVSPNYHLYTPAEVEAVIARL 237
>sp|Q9M4T8|PSA5_SOYBN Proteasome subunit alpha type 5 (20S proteasome alpha subunit E)
(20S proteasome subunit alpha-5)
gi|7839485|gb|AAF70292.1|AF255338_1 20S proteasome
subunit [Glycine max]
Length = 237
Score = 229 bits (583), Expect = 3e-59
Identities = 112/117 (95%), Positives = 116/117 (98%)
Frame = -2
Query: 603 LRFGEGDEESMSRPFGVSLLIAGHDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQ 424
LRFGEGDEESMSRPFGVSLLIAGHDENGPSLYYTDPSGTFWQCN KAIGSGSEGADSSLQ
Sbjct: 121 LRFGEGDEESMSRPFGVSLLIAGHDENGPSLYYTDPSGTFWQCNGKAIGSGSEGADSSLQ 180
Query: 423 EQYNKELTLQEAETIALSILKQVMEEKVTPNNVDIAKVSPTYHLYTPAEVEAVISRL 253
EQ+NK+LTLQEAETIALSILKQVMEEKVTPNNVDIAKV+PTYHLYTP+EVEAVISRL
Sbjct: 181 EQFNKDLTLQEAETIALSILKQVMEEKVTPNNVDIAKVAPTYHLYTPSEVEAVISRL 237
>ref|NP_188046.1| 20S proteasome alpha subunit E2 (PAE2); protein id: At3g14290.1,
supported by cDNA: gi_13877964, supported by cDNA:
gi_17065643, supported by cDNA: gi_3421089 [Arabidopsis
thaliana] gi|18206373|sp|Q42134|PS52_ARATH Proteasome
subunit alpha type 5-2 (20S proteasome alpha subunit E2)
gi|25290065|pir||T51973 C 3.4.25.1 proteasome
endopeptidase complex () chain PAE2 [imported] -
Arabidopsis thaliana gi|3421090|gb|AAC32061.1| 20S
proteasome subunit PAE2 [Arabidopsis thaliana]
gi|9279577|dbj|BAB01035.1| 20S proteasome subunit
PAE-like protein [Arabidopsis thaliana]
gi|13877965|gb|AAK44060.1|AF370245_1 putative 20S
proteasome subunit PAE2 [Arabidopsis thaliana]
gi|17065644|gb|AAL33816.1| putative 20S proteasome
subunit PAE2 [Arabidopsis thaliana]
Length = 237
Score = 224 bits (571), Expect = 7e-58
Identities = 109/117 (93%), Positives = 115/117 (98%)
Frame = -2
Query: 603 LRFGEGDEESMSRPFGVSLLIAGHDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQ 424
LRFGEG+EESMSRPFGVSLLIAGHDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQ
Sbjct: 121 LRFGEGEEESMSRPFGVSLLIAGHDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQ 180
Query: 423 EQYNKELTLQEAETIALSILKQVMEEKVTPNNVDIAKVSPTYHLYTPAEVEAVISRL 253
EQ+NK++TLQEAETIA+SILKQVMEEKVTPNNVDIAKV+P YHLYTP EVEAVISRL
Sbjct: 181 EQFNKDITLQEAETIAVSILKQVMEEKVTPNNVDIAKVAPAYHLYTPQEVEAVISRL 237
>ref|NP_175788.1| 20S proteasome alpha subunit E1 (PAE1); protein id: At1g53850.1,
supported by cDNA: 20801., supported by cDNA:
gi_18252872, supported by cDNA: gi_3421086 [Arabidopsis
thaliana] gi|12229903|sp|O81149|PS51_ARATH Proteasome
subunit alpha type 5-1 (20S proteasome alpha subunit E1)
gi|25290064|pir||T51972 C 3.4.25.1 proteasome
endopeptidase complex () PAE1 [imported] - Arabidopsis
thaliana gi|3421087|gb|AAC32060.1| 20S proteasome
subunit PAE1 [Arabidopsis thaliana]
gi|6056394|gb|AAF02858.1|AC009324_7 20S proteasome
subunit PAE1 [Arabidopsis thaliana]
gi|18252873|gb|AAL62363.1| 20S proteasome subunit PAE1
[Arabidopsis thaliana] gi|21387063|gb|AAM47935.1| 20S
proteasome subunit PAE1 [Arabidopsis thaliana]
gi|21554176|gb|AAM63255.1| Proteasome subunit alpha type
5-1 (20S proteasome alpha subunit E1) [Arabidopsis
thaliana]
Length = 237
Score = 222 bits (566), Expect = 3e-57
Identities = 108/117 (92%), Positives = 115/117 (97%)
Frame = -2
Query: 603 LRFGEGDEESMSRPFGVSLLIAGHDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQ 424
LRFGEG+EESMSRPFGVSLLIAGHDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQ
Sbjct: 121 LRFGEGEEESMSRPFGVSLLIAGHDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQ 180
Query: 423 EQYNKELTLQEAETIALSILKQVMEEKVTPNNVDIAKVSPTYHLYTPAEVEAVISRL 253
EQ+NK+L+LQEAETIA+SILKQVMEEKVTPNNVDIAKV+P YHLYTP EVEAVI+RL
Sbjct: 181 EQFNKDLSLQEAETIAVSILKQVMEEKVTPNNVDIAKVAPAYHLYTPQEVEAVIARL 237
>emb|CAD10778.1| 20S proteasome subunit alpha V [Physcomitrella patens]
Length = 237
Score = 196 bits (498), Expect = 2e-49
Identities = 96/117 (82%), Positives = 105/117 (89%)
Frame = -2
Query: 603 LRFGEGDEESMSRPFGVSLLIAGHDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQ 424
LRFGE DEESMSRPFGVSLLIAGHDE+GP LY+TDPSGTFWQC+AKAIGSGSEGAD+SLQ
Sbjct: 121 LRFGEFDEESMSRPFGVSLLIAGHDESGPCLYHTDPSGTFWQCDAKAIGSGSEGADTSLQ 180
Query: 423 EQYNKELTLQEAETIALSILKQVMEEKVTPNNVDIAKVSPTYHLYTPAEVEAVISRL 253
E +NK +TL+EAET+ALS LK VMEEKVT NVDIAKV+P YHLYTP EVE VI RL
Sbjct: 181 EHFNKNMTLEEAETLALSTLKHVMEEKVTSCNVDIAKVAPKYHLYTPEEVEVVIQRL 237
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 501,336,869
Number of Sequences: 1393205
Number of extensions: 10512822
Number of successful extensions: 31066
Number of sequences better than 10.0: 451
Number of HSP's better than 10.0 without gapping: 29531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30990
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23711793746
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
