Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004538A_C01 KMC004538A_c01
(505 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_704473.1| hypothetical protein [Plasmodium falciparum 3D7... 34 0.82
ref|NP_704964.1| hypothetical protein [Plasmodium falciparum 3D7... 33 1.8
gb|AAC33267.1| putative olfactory receptor [Mus musculus] 33 1.8
ref|NP_149387.1| heme maturase [Tetrahymena thermophila] gi|1501... 33 1.8
ref|NP_704843.1| hypothetical protein [Plasmodium falciparum 3D7... 33 1.8
>ref|NP_704473.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23499212|emb|CAD51292.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 1346
Score = 34.3 bits (77), Expect = 0.82
Identities = 18/76 (23%), Positives = 35/76 (45%)
Frame = -2
Query: 246 ILFYIFMITPVNLNYRHLNFFFSFFPFPNMLCNYIYYRKKGKI*FPSLEQGCNGEVNFGS 67
IL Y+ + NY + +F + + N+ NY YY + + N ++NF +
Sbjct: 1240 ILLYLNKYDIICSNYNSIKYFTKYIHYKNLTINYFYYYDNDQNILDESHKQHNNKLNFIN 1299
Query: 66 DDHS*PSIQNSLFYIT 19
++ +N+ FYI+
Sbjct: 1300 FKNNNEQNENANFYIS 1315
>ref|NP_704964.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23615209|emb|CAD52199.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 4273
Score = 33.1 bits (74), Expect = 1.8
Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 16/94 (17%)
Frame = -2
Query: 363 FFQVAQISGYDFFVDYIERSKF*KLLELSCSQLLSSVIII--------LFYIFMITPVNL 208
F + I Y ++D++ +L++ C LL S +I+ + YI N
Sbjct: 1072 FENIYHIKIYFIYIDFL-------VLKIICLFLLVSFVILYIVLPIPFILYIHNHIVYNY 1124
Query: 207 NYR--------HLNFFFSFFPFPNMLCNYIYYRK 130
N++ H+N ++FPF L N +YY K
Sbjct: 1125 NFKKFIPKYISHINGIVNYFPFKIFLKNMLYYHK 1158
>gb|AAC33267.1| putative olfactory receptor [Mus musculus]
Length = 175
Score = 33.1 bits (74), Expect = 1.8
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 10/77 (12%)
Frame = +3
Query: 27 KIKNFGC-------LVRSDHLIQNLLLHYSPVLMREIIFS---LSFYSIYSYITCLERGK 176
KI +F C L SD L +L++H PVL+ I FS S++ I S I + +
Sbjct: 56 KIPHFFCELNQLSQLTCSDSLSSHLIMHLVPVLLGAISFSSILYSYFKIVSSICSISSVQ 115
Query: 177 KKKRNSNAYNSNLQVLS 227
K + S+ S+L ++S
Sbjct: 116 GKYKASSTCVSHLSIVS 132
>ref|NP_149387.1| heme maturase [Tetrahymena thermophila]
gi|15011489|gb|AAK77584.1|AF396436_24 heme maturase
[Tetrahymena thermophila]
Length = 518
Score = 33.1 bits (74), Expect = 1.8
Identities = 21/58 (36%), Positives = 31/58 (53%)
Frame = -2
Query: 345 ISGYDFFVDYIERSKF*KLLELSCSQLLSSVIIILFYIFMITPVNLNYRHLNFFFSFF 172
I Y F+ Y E S + LL + + ++I LFYI +N+N++ LNFF FF
Sbjct: 35 IKSYVFYYYYFE-SIYIALLNNLINLNYNIILIFLFYI-----INVNFKFLNFFILFF 86
>ref|NP_704843.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23505205|emb|CAD51986.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 4530
Score = 33.1 bits (74), Expect = 1.8
Identities = 24/84 (28%), Positives = 39/84 (45%), Gaps = 2/84 (2%)
Frame = -2
Query: 372 NGLFFQVAQISGYDFFVDYIERSKF*KLLELSCSQLLSSVIIILF--YIFMITPVNLNYR 199
N ++ ++ + YDF +DY+ K SC L + + F F+ PV N+
Sbjct: 1483 NNIYIKIIDVKLYDFIIDYLNYIK----ENNSCYYLCPYIFVYKFKGLCFLFVPVCNNF- 1537
Query: 198 HLNFFFSFFPFPNMLCNYIYYRKK 127
+L F+ FF F N C+ + KK
Sbjct: 1538 YLLFYHFFFHFLN--CSDFFSFKK 1559
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 407,309,122
Number of Sequences: 1393205
Number of extensions: 8257600
Number of successful extensions: 16827
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 16187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16808
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15362785481
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
