Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004537A_C01 KMC004537A_c01
(492 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_195423.1| patatin, putative; protein id: At4g37060.1 [Ara... 101 5e-21
pir||T52294 patatin-like protein [imported] - Arabidopsis thalia... 99 2e-20
pir||H85437 patatin-like protein [imported] - Arabidopsis thalia... 99 2e-20
gb|AAF98368.1|AF158027_1 patatin-like protein 1 [Nicotiana tabacum] 96 3e-19
ref|NP_195422.1| patatin, putative; protein id: At4g37050.1 [Ara... 94 6e-19
>ref|NP_195423.1| patatin, putative; protein id: At4g37060.1 [Arabidopsis thaliana]
gi|25296166|pir||G85437 patatin-like protein [imported]
- Arabidopsis thaliana gi|4006870|emb|CAB16788.1|
patatin-like protein [Arabidopsis thaliana]
gi|7270655|emb|CAB80372.1| patatin-like protein
[Arabidopsis thaliana]
Length = 414
Score = 101 bits (251), Expect = 5e-21
Identities = 51/96 (53%), Positives = 71/96 (73%), Gaps = 1/96 (1%)
Frame = -2
Query: 488 DLVDYFNQVVFSVLESQDSYLRIQVD-LEKELASVDGATKENLDNLVKEGEKLLKNKVTG 312
D+V Y + VVF L+S+D YLRI D LE + +++D +TK NL+NL+K GEK+L N+V
Sbjct: 301 DIVHYHSSVVFKALQSEDKYLRIDDDTLEGDASTLDLSTKSNLENLIKLGEKMLTNRVMQ 360
Query: 311 VNLDTGAGEPLLHKGSNEEELKRFAKLLSEERKQRK 204
+N+DTG EP +N+E+LKRFAK+LSEERK R+
Sbjct: 361 MNIDTGTYEPAAENINNDEQLKRFAKILSEERKLRR 396
>pir||T52294 patatin-like protein [imported] - Arabidopsis thaliana (fragment)
gi|2632059|emb|CAA05628.1| patatin-like protein
[Arabidopsis thaliana]
Length = 410
Score = 99.4 bits (246), Expect = 2e-20
Identities = 49/96 (51%), Positives = 72/96 (74%), Gaps = 1/96 (1%)
Frame = -2
Query: 488 DLVDYFNQVVFSVLESQDSYLRIQVD-LEKELASVDGATKENLDNLVKEGEKLLKNKVTG 312
D++ Y + VVF L+S+D YLRI D LE +++++D ATK NL+NL K GEK+L N+V
Sbjct: 297 DMIHYHSSVVFKALQSEDKYLRIDDDTLEGDVSTMDLATKSNLENLQKIGEKMLTNRVMQ 356
Query: 311 VNLDTGAGEPLLHKGSNEEELKRFAKLLSEERKQRK 204
+N+DTG EP+ +N+E+LKR+AK+LS+ERK R+
Sbjct: 357 MNIDTGVYEPVAENITNDEQLKRYAKILSDERKLRR 392
>pir||H85437 patatin-like protein [imported] - Arabidopsis thaliana
gi|4006869|emb|CAB16787.1| patatin-like protein
[Arabidopsis thaliana] gi|7270656|emb|CAB80373.1|
patatin-like protein [Arabidopsis thaliana]
Length = 414
Score = 99.4 bits (246), Expect = 2e-20
Identities = 49/96 (51%), Positives = 72/96 (74%), Gaps = 1/96 (1%)
Frame = -2
Query: 488 DLVDYFNQVVFSVLESQDSYLRIQVD-LEKELASVDGATKENLDNLVKEGEKLLKNKVTG 312
D++ Y + VVF L+S+D YLRI D LE +++++D ATK NL+NL K GEK+L N+V
Sbjct: 301 DMIHYHSSVVFKALQSEDKYLRIDDDTLEGDVSTMDLATKSNLENLQKIGEKMLTNRVMQ 360
Query: 311 VNLDTGAGEPLLHKGSNEEELKRFAKLLSEERKQRK 204
+N+DTG EP+ +N+E+LKR+AK+LS+ERK R+
Sbjct: 361 MNIDTGVYEPVAENITNDEQLKRYAKILSDERKLRR 396
>gb|AAF98368.1|AF158027_1 patatin-like protein 1 [Nicotiana tabacum]
Length = 420
Score = 95.5 bits (236), Expect = 3e-19
Identities = 54/96 (56%), Positives = 67/96 (69%), Gaps = 1/96 (1%)
Frame = -2
Query: 488 DLVDYFNQVVFSVLESQDSYLRIQVD-LEKELASVDGATKENLDNLVKEGEKLLKNKVTG 312
DLVDY N VVF L S ++YLRIQ D L ASVD ATKENL+ LV+ G+ LLK ++
Sbjct: 306 DLVDYHNSVVFQALHSDNNYLRIQEDELSGTEASVDIATKENLERLVEIGQNLLKKPLSR 365
Query: 311 VNLDTGAGEPLLHKGSNEEELKRFAKLLSEERKQRK 204
VNL+TG EP+ G+NEE L RFA+LL ER+ R+
Sbjct: 366 VNLETGLTEPIPKGGTNEEALIRFARLLVNERRLRE 401
>ref|NP_195422.1| patatin, putative; protein id: At4g37050.1 [Arabidopsis thaliana]
gi|25296165|pir||F85437 patatin-like protein [imported]
- Arabidopsis thaliana gi|4006871|emb|CAB16789.1|
patatin-like protein [Arabidopsis thaliana]
gi|7270654|emb|CAB80371.1| patatin-like protein
[Arabidopsis thaliana]
Length = 428
Score = 94.4 bits (233), Expect = 6e-19
Identities = 50/97 (51%), Positives = 72/97 (73%), Gaps = 1/97 (1%)
Frame = -2
Query: 491 NDLVDYFNQVVFSVLESQDSYLRIQVD-LEKELASVDGATKENLDNLVKEGEKLLKNKVT 315
+D+VDY + VVF L S+ +YLRI D L+ +L SVD +T++N++ LV+ GE LLK +V+
Sbjct: 324 HDMVDYQSSVVFQALRSEKNYLRIDDDSLKGDLGSVDISTEKNMEGLVEVGEALLKKRVS 383
Query: 314 GVNLDTGAGEPLLHKGSNEEELKRFAKLLSEERKQRK 204
VNL++G +P+ +NEE LKRFAK+LSEERK R+
Sbjct: 384 RVNLESGHYQPISENVTNEEALKRFAKVLSEERKLRE 420
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 379,008,484
Number of Sequences: 1393205
Number of extensions: 7328784
Number of successful extensions: 21019
Number of sequences better than 10.0: 87
Number of HSP's better than 10.0 without gapping: 20281
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20955
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14203329973
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
