Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004536A_C02 KMC004536A_c02
(614 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_564555.1| expressed protein; protein id: At1g49820.1, sup... 146 2e-34
ref|NP_771538.1| bll4898 [Bradyrhizobium japonicum] gi|27353163|... 74 1e-12
ref|NP_438075.1| conserved hypothetical protein [Sinorhizobium m... 59 5e-08
ref|NP_107639.1| hypothetical protein [Mesorhizobium loti] gi|14... 57 2e-07
ref|NP_389239.1| ykrT [Bacillus subtilis] gi|7475143|pir||D69863... 55 1e-06
>ref|NP_564555.1| expressed protein; protein id: At1g49820.1, supported by cDNA:
gi_15982810, supported by cDNA: gi_19699219 [Arabidopsis
thaliana] gi|25372942|pir||A96535 unknown protein,
11341-13243 [imported] - Arabidopsis thaliana
gi|12323599|gb|AAG51775.1|AC079674_8 unknown protein;
11341-13243 [Arabidopsis thaliana]
gi|15982811|gb|AAL09753.1| At1g49820/F10F5_1
[Arabidopsis thaliana] gi|19699220|gb|AAL90976.1|
At1g49820/F10F5_1 [Arabidopsis thaliana]
Length = 420
Score = 146 bits (369), Expect = 2e-34
Identities = 72/108 (66%), Positives = 86/108 (78%)
Frame = -3
Query: 612 HQKFTALWDEHRDGAGEAYLPAIYNNPEVQLLVQKKYMTDLFHDSLGFGAAKMIRRIVGV 433
+++F ALWD+++DG GEAYL IYNN EV VQ+ YM +L HDSLGFGAAKMIRRIVGV
Sbjct: 311 NKRFIALWDQNKDGPGEAYLADIYNNTEVLKFVQENYMRNLLHDSLGFGAAKMIRRIVGV 370
Query: 432 VHVADFESITDADKRANCERRALNLAKMLLKERRKFEGIAEIVSAIRE 289
HV DFESI + +RA CER AL AKMLLKERRKF+ I E+VSAI++
Sbjct: 371 AHVEDFESIEEDKRRAICERSALEFAKMLLKERRKFKSIGEVVSAIQQ 418
>ref|NP_771538.1| bll4898 [Bradyrhizobium japonicum] gi|27353163|dbj|BAC50163.1|
bll4898 [Bradyrhizobium japonicum USDA 110]
Length = 430
Score = 74.3 bits (181), Expect = 1e-12
Identities = 44/109 (40%), Positives = 65/109 (59%), Gaps = 3/109 (2%)
Frame = -3
Query: 606 KFTALWDEHRDGAGEAYLPAIY--NNPEVQLLVQKK-YMTDLFHDSLGFGAAKMIRRIVG 436
KF LW H AG+A+ +++ N +L +++ YM LF +++GF AAK+IRRI G
Sbjct: 313 KFLDLWRSH--AAGDAFPASLFAGENGAARLEAERQAYMQRLFAETVGFAAAKIIRRIFG 370
Query: 435 VVHVADFESITDADKRANCERRALNLAKMLLKERRKFEGIAEIVSAIRE 289
+ H DFE I D KRA E RA+ LA+ ++ E F IA++ A R+
Sbjct: 371 LAHNIDFELIEDPKKRAISEARAVRLARAMMVETGAFRTIADVTGAARK 419
>ref|NP_438075.1| conserved hypothetical protein [Sinorhizobium meliloti]
gi|25372944|pir||G96033 conserved hypothetical protein
SMb20623 [imported] - Sinorhizobium meliloti (strain
1021) magaplasmid pSymB gi|15141423|emb|CAC49935.1|
conserved hypothetical protein [Sinorhizobium meliloti]
Length = 423
Score = 58.9 bits (141), Expect = 5e-08
Identities = 33/103 (32%), Positives = 54/103 (52%), Gaps = 3/103 (2%)
Frame = -3
Query: 606 KFTALWDEHRDGAGEAYLPAIYNNPEVQLLVQKKY---MTDLFHDSLGFGAAKMIRRIVG 436
+F LW R G Y ++ + L ++ + D++ + LGF ++ RRI+G
Sbjct: 310 EFAQLWRTERMGI--LYQARVFEDRNDPLGAEQALNIVIDDIWREMLGFAGIEIHRRILG 367
Query: 435 VVHVADFESITDADKRANCERRALNLAKMLLKERRKFEGIAEI 307
+ H ADFE+I D D+RA CE +AL L + L R + + +I
Sbjct: 368 LAHNADFETIADPDRRAACESKALKLGRHLAVNRHRIHSLRDI 410
>ref|NP_107639.1| hypothetical protein [Mesorhizobium loti]
gi|14026829|dbj|BAB53425.1| hypothetical protein
[Mesorhizobium loti]
Length = 423
Score = 57.0 bits (136), Expect = 2e-07
Identities = 33/103 (32%), Positives = 56/103 (54%), Gaps = 3/103 (2%)
Frame = -3
Query: 606 KFTALWDEHRDGAGEAYLPAIYNNPEVQLLVQKKY---MTDLFHDSLGFGAAKMIRRIVG 436
+F+ LW R AG Y +++ + +L ++ + ++ D LGF ++ RRI+G
Sbjct: 310 EFSHLWRTER--AGMLYQKSLFEDQGDRLGAEQALDHVLHQIWTDLLGFAGIEVHRRILG 367
Query: 435 VVHVADFESITDADKRANCERRALNLAKMLLKERRKFEGIAEI 307
+ H ADFE+I D RA+CE +AL + + RR+ I E+
Sbjct: 368 LAHNADFETIADEALRASCEAKALKFGRHIAVNRRQIHSIDEV 410
>ref|NP_389239.1| ykrT [Bacillus subtilis] gi|7475143|pir||D69863 hypothetical
protein ykrT - Bacillus subtilis
gi|2633727|emb|CAB13229.1| ykrT [Bacillus subtilis
subsp. subtilis str. 168]
Length = 399
Score = 54.7 bits (130), Expect = 1e-06
Identities = 24/75 (32%), Positives = 45/75 (60%), Gaps = 4/75 (5%)
Frame = -3
Query: 504 YMTD----LFHDSLGFGAAKMIRRIVGVVHVADFESITDADKRANCERRALNLAKMLLKE 337
Y+TD +F +++GF ++IRR +G+ HVAD ++I DKR +R AL +++
Sbjct: 320 YLTDTLSHIFEEAIGFAGCELIRRTIGLAHVADLDTIVPFDKRIGRKRLALETGTAFIEK 379
Query: 336 RRKFEGIAEIVSAIR 292
R +F+ I +++ +
Sbjct: 380 RSEFKTITDVIELFK 394
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 515,388,310
Number of Sequences: 1393205
Number of extensions: 10554700
Number of successful extensions: 30789
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 29840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30767
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24854530794
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
