Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004534A_C01 KMC004534A_c01
(498 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q41364|SOT1_SPIOL 2-oxoglutarate/malate translocator, chlorop... 34 0.79
dbj|BAB39687.1| phytochrome [Marchantia paleacea var. diptera] 33 1.4
gb|AAM97172.1| p17 protein [Human immunodeficiency virus 1] 33 1.8
emb|CAA04183.1| Mad-related protein Smad7B [Mus musculus] 33 2.3
ref|NP_005895.1| MAD, mothers against decapentaplegic homolog 7;... 33 2.3
>sp|Q41364|SOT1_SPIOL 2-oxoglutarate/malate translocator, chloroplast precursor
gi|595681|gb|AAA68148.1| 2-oxoglutarate/malate
translocator
Length = 569
Score = 34.3 bits (77), Expect = 0.79
Identities = 18/37 (48%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = +2
Query: 335 PVFQHKLIQFQSKPSCLFPHPLSPLS*AE--SPPPPP 439
P HK F S PS L PH L P+S + +PPPPP
Sbjct: 47 PSLSHK--HFLSPPSLLLPHKLKPISASSPTNPPPPP 81
>dbj|BAB39687.1| phytochrome [Marchantia paleacea var. diptera]
Length = 1126
Score = 33.5 bits (75), Expect = 1.4
Identities = 25/76 (32%), Positives = 38/76 (49%), Gaps = 5/76 (6%)
Frame = -1
Query: 495 GGGNRPVHRTFRISLRYPFGGGGGDSAQDSGERGWGNRQEGLD*NCINLC*K-----TGN 331
GGG VH FR++ +P G + Q+ +RG G QEGL +N+C K +G+
Sbjct: 1042 GGGVHVVHFEFRVT--HPGAGLPEELVQEMFDRGRGMTQEGLG---LNMCRKLLKLMSGD 1096
Query: 330 YVYAAQSFREYITCNV 283
Y ++ + Y NV
Sbjct: 1097 VQYIREAGKCYFLVNV 1112
>gb|AAM97172.1| p17 protein [Human immunodeficiency virus 1]
Length = 128
Score = 33.1 bits (74), Expect = 1.8
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +1
Query: 67 MDDWKMICTQPAGKKCYQYQHLK 135
+D W+ I +P GKKCY +HLK
Sbjct: 13 LDAWEKIKLRPGGKKCYMMKHLK 35
>emb|CAA04183.1| Mad-related protein Smad7B [Mus musculus]
Length = 425
Score = 32.7 bits (73), Expect = 2.3
Identities = 16/29 (55%), Positives = 16/29 (55%)
Frame = +2
Query: 380 CLFPHPLSPLS*AESPPPPPKGYRKDILK 466
C PH LS L ESPPPP Y D LK
Sbjct: 192 CCNPHHLSRLCELESPPPPYSRYPMDFLK 220
>ref|NP_005895.1| MAD, mothers against decapentaplegic homolog 7; MAD (mothers
against decapentaplegic, Drosophila) homolog 7; Mothers
against decapentaplegic, drosophila, homolog of, 7 [Homo
sapiens] gi|13959538|sp|O15105|SMA7_HUMAN Mothers
against decapentaplegic homolog 7 (SMAD 7) (Mothers
against DPP homolog 7) (Smad7) (hSMAD7)
gi|2252822|gb|AAB81246.1| MAD-related gene SMAD7 [Homo
sapiens] gi|18418630|gb|AAL68977.1|AF026559_1 Smad7
[Homo sapiens]
Length = 426
Score = 32.7 bits (73), Expect = 2.3
Identities = 16/29 (55%), Positives = 16/29 (55%)
Frame = +2
Query: 380 CLFPHPLSPLS*AESPPPPPKGYRKDILK 466
C PH LS L ESPPPP Y D LK
Sbjct: 192 CCNPHHLSRLCELESPPPPYSRYPMDFLK 220
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 470,488,202
Number of Sequences: 1393205
Number of extensions: 10800691
Number of successful extensions: 38278
Number of sequences better than 10.0: 75
Number of HSP's better than 10.0 without gapping: 33582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37842
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14783057727
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
