Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004532A_C01 KMC004532A_c01
(751 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_003599.1| G protein-coupled receptor 65; T-cell death-ass... 34 2.5
gb|AAH35633.1| similar to G protein-coupled receptor [Homo sapiens] 32 7.4
gb|AAL31725.1| gelsolin [Drosophila yakuba] 32 9.7
sp|Q08406|CNTR_RAT Ciliary neurotrophic factor receptor alpha pr... 32 9.7
>ref|NP_003599.1| G protein-coupled receptor 65; T-cell death-associated gene 8 [Homo
sapiens] gi|3420002|gb|AAC31794.1| T cell-death
associated protein [Homo sapiens]
Length = 337
Score = 33.9 bits (76), Expect = 2.5
Identities = 20/51 (39%), Positives = 28/51 (54%)
Frame = -2
Query: 393 AFLTSITKNYDLILFV*FLLQFMFLKVNDIGKHVNISIWLLLTFGLDILFW 241
AFLT I D L V + L+F FL+ I V++SIW+L T ++ W
Sbjct: 103 AFLTCIA--VDRYLAVVYPLKFFFLRTRRIALMVSLSIWILETIFNAVMLW 151
>gb|AAH35633.1| similar to G protein-coupled receptor [Homo sapiens]
Length = 337
Score = 32.3 bits (72), Expect = 7.4
Identities = 19/51 (37%), Positives = 27/51 (52%)
Frame = -2
Query: 393 AFLTSITKNYDLILFV*FLLQFMFLKVNDIGKHVNISIWLLLTFGLDILFW 241
AFLT I D L V + L+F FL+ V++SIW+L T ++ W
Sbjct: 103 AFLTCIA--VDRYLAVVYPLKFFFLRTRRFALMVSLSIWILETIFNAVMLW 151
>gb|AAL31725.1| gelsolin [Drosophila yakuba]
Length = 335
Score = 32.0 bits (71), Expect = 9.7
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -1
Query: 727 ALTYAPYHSAIIYFGTGS*SFHKQNLVDAYSDFWE 623
AL H I+ G G+ +F KQ VD +SD+W+
Sbjct: 158 ALLSGKSHKIYIWKGLGASAFEKQAAVDRFSDYWD 192
>sp|Q08406|CNTR_RAT Ciliary neurotrophic factor receptor alpha precursor (CNTFR alpha)
gi|2118671|pir||I58141 ciliary neurotrophic factor
receptor alpha chain - rat gi|265056|gb|AAB25290.1|
ciliary neurotrophic factor receptor alpha component;
CNTFR alpha [Rattus sp.]
Length = 372
Score = 32.0 bits (71), Expect = 9.7
Identities = 16/45 (35%), Positives = 27/45 (59%), Gaps = 5/45 (11%)
Frame = +3
Query: 45 CEWKTS*PS-TPHSFTITILHSSR----HKNPT*VTNQVHLQRMH 164
C W S P+ P++F +T+LH S+ K+P + N+ H++ MH
Sbjct: 127 CSWHLSAPTYIPNTFNVTVLHGSKMMVCEKDPA-LKNRCHIRYMH 170
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 577,226,055
Number of Sequences: 1393205
Number of extensions: 11263318
Number of successful extensions: 23162
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 22479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23160
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 36314099463
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
