Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004529A_C01 KMC004529A_c01
(738 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF04915.1|AF011555_1 jasmonic acid 2 [Lycopersicon esculentum] 53 4e-06
ref|NP_212708.1| conserved hypothetical integral membrane protei... 33 3.2
>gb|AAF04915.1|AF011555_1 jasmonic acid 2 [Lycopersicon esculentum]
Length = 349
Score = 53.1 bits (126), Expect = 4e-06
Identities = 23/51 (45%), Positives = 37/51 (72%), Gaps = 1/51 (1%)
Frame = -3
Query: 715 VEEEVQSGVRTQQVENPGFFAGS-NGFTQGFSNSVDQYGFRYPAQTVGFGF 566
++EEV+SG R Q+++ +F S NGF+Q ++N+VDQ+G + P QT+ GF
Sbjct: 297 LDEEVESGKRNQRIDQSSYFQQSLNGFSQAYTNNVDQFGIQCPNQTLNLGF 347
>ref|NP_212708.1| conserved hypothetical integral membrane protein [Borrelia
burgdorferi] gi|7463055|pir||E70171 conserved
hypothetical integral membrane protein BB0574 - Lyme
disease spirochete gi|2688484|gb|AAC66929.1| conserved
hypothetical integral membrane protein [Borrelia
burgdorferi B31]
Length = 283
Score = 33.5 bits (75), Expect = 3.2
Identities = 18/49 (36%), Positives = 31/49 (62%), Gaps = 2/49 (4%)
Frame = -1
Query: 291 KLGYSSGLYLNVLNHMSHVLY--LKCTSNLFGMLGFILFLNLM*YF*LT 151
K+ YS G +L + ++ V + ++ SNLF +LGF++FL + Y+ LT
Sbjct: 224 KIVYSLGFFLYLASYFKIVDFGSIRKKSNLFAILGFLVFLAMFNYYYLT 272
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 639,791,129
Number of Sequences: 1393205
Number of extensions: 14698685
Number of successful extensions: 32890
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 31891
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32869
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 35188080875
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
