Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004528A_C01 KMC004528A_c01
(588 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL67125.1| AT5g14200/MUA22_20 [Arabidopsis thaliana] 139 2e-32
ref|NP_196924.1| 3-isopropylmalate dehydrogenase; protein id: At... 139 2e-32
gb|AAM62677.1| putative 3-isopropylmalate dehydrogenase [Arabido... 137 1e-31
ref|NP_178171.1| putative 3-isopropylmalate dehydrogenase; prote... 137 1e-31
gb|AAL32519.1| putative 3-isopropylmalate dehydrogenase [Arabido... 137 1e-31
>gb|AAL67125.1| AT5g14200/MUA22_20 [Arabidopsis thaliana]
Length = 409
Score = 139 bits (351), Expect = 2e-32
Identities = 68/81 (83%), Positives = 75/81 (91%)
Frame = -1
Query: 588 SAPDIAGQDKANPFATVLSAAMLLRYGLGEEEAAKRIEDAVVDTLNRGFRTADIYSAGTK 409
SAPDIAGQDKANP AT+LSAAMLL+YGLGEE+AAKRIEDAVVD LN+GFRT DIYS G K
Sbjct: 327 SAPDIAGQDKANPLATILSAAMLLKYGLGEEKAAKRIEDAVVDALNKGFRTGDIYSPGNK 386
Query: 408 LVGCKQLGEEILKSVESLVPA 346
LVGCK++GEE+LKSVES VPA
Sbjct: 387 LVGCKEMGEEVLKSVESKVPA 407
>ref|NP_196924.1| 3-isopropylmalate dehydrogenase; protein id: At5g14200.1, supported
by cDNA: gi_18377878 [Arabidopsis thaliana]
gi|21759264|sp|Q9FMT1|LE33_ARATH 3-isopropylmalate
dehydrogenase 3, chloroplast precursor (Beta-IPM
dehydrogenase 3) (IMDH 3) (3-IPM-DH 3)
gi|9757801|dbj|BAB08299.1| 3-isopropylmalate
dehydrogenase [Arabidopsis thaliana]
Length = 409
Score = 139 bits (351), Expect = 2e-32
Identities = 68/81 (83%), Positives = 75/81 (91%)
Frame = -1
Query: 588 SAPDIAGQDKANPFATVLSAAMLLRYGLGEEEAAKRIEDAVVDTLNRGFRTADIYSAGTK 409
SAPDIAGQDKANP AT+LSAAMLL+YGLGEE+AAKRIEDAVVD LN+GFRT DIYS G K
Sbjct: 327 SAPDIAGQDKANPLATILSAAMLLKYGLGEEKAAKRIEDAVVDALNKGFRTGDIYSPGNK 386
Query: 408 LVGCKQLGEEILKSVESLVPA 346
LVGCK++GEE+LKSVES VPA
Sbjct: 387 LVGCKEMGEEVLKSVESKVPA 407
>gb|AAM62677.1| putative 3-isopropylmalate dehydrogenase [Arabidopsis thaliana]
Length = 404
Score = 137 bits (345), Expect = 1e-31
Identities = 67/82 (81%), Positives = 76/82 (91%)
Frame = -1
Query: 588 SAPDIAGQDKANPFATVLSAAMLLRYGLGEEEAAKRIEDAVVDTLNRGFRTADIYSAGTK 409
SAPDIAGQDKANP AT+LSAAMLL+YGLGEE+AAKRIEDAV+ LN GFRT DIYSAGTK
Sbjct: 322 SAPDIAGQDKANPLATILSAAMLLKYGLGEEKAAKRIEDAVLVALNNGFRTGDIYSAGTK 381
Query: 408 LVGCKQLGEEILKSVESLVPAA 343
LVGCK++GEE+LKSV+S VPA+
Sbjct: 382 LVGCKEMGEEVLKSVDSQVPAS 403
>ref|NP_178171.1| putative 3-isopropylmalate dehydrogenase; protein id: At1g80560.1,
supported by cDNA: 152141., supported by cDNA:
gi_17064729 [Arabidopsis thaliana]
gi|21759255|sp|P93832|LE32_ARATH 3-isopropylmalate
dehydrogenase 2, chloroplast precursor (Beta-IPM
dehydrogenase 2) (IMDH 2) (3-IPM-DH 2)
gi|25283819|pir||F96837 hypothetical protein T21F11.11
[imported] - Arabidopsis thaliana
gi|1903021|emb|CAA71268.1| hypothetical
3-isopropylmalate dehydrogenase [Arabidopsis thaliana]
gi|6730747|gb|AAF27137.1|AC018849_25 putative
3-isopropylmalate dehydrogenase; 30797-28504
[Arabidopsis thaliana]
Length = 405
Score = 137 bits (345), Expect = 1e-31
Identities = 67/82 (81%), Positives = 76/82 (91%)
Frame = -1
Query: 588 SAPDIAGQDKANPFATVLSAAMLLRYGLGEEEAAKRIEDAVVDTLNRGFRTADIYSAGTK 409
SAPDIAGQDKANP AT+LSAAMLL+YGLGEE+AAKRIEDAV+ LN GFRT DIYSAGTK
Sbjct: 323 SAPDIAGQDKANPLATILSAAMLLKYGLGEEKAAKRIEDAVLVALNNGFRTGDIYSAGTK 382
Query: 408 LVGCKQLGEEILKSVESLVPAA 343
LVGCK++GEE+LKSV+S VPA+
Sbjct: 383 LVGCKEMGEEVLKSVDSQVPAS 404
>gb|AAL32519.1| putative 3-isopropylmalate dehydrogenase [Arabidopsis thaliana]
gi|21387085|gb|AAM47946.1| putative 3-isopropylmalate
dehydrogenase [Arabidopsis thaliana]
Length = 405
Score = 137 bits (345), Expect = 1e-31
Identities = 67/82 (81%), Positives = 76/82 (91%)
Frame = -1
Query: 588 SAPDIAGQDKANPFATVLSAAMLLRYGLGEEEAAKRIEDAVVDTLNRGFRTADIYSAGTK 409
SAPDIAGQDKANP AT+LSAAMLL+YGLGEE+AAKRIEDAV+ LN GFRT DIYSAGTK
Sbjct: 323 SAPDIAGQDKANPLATILSAAMLLKYGLGEEKAAKRIEDAVLVALNNGFRTGDIYSAGTK 382
Query: 408 LVGCKQLGEEILKSVESLVPAA 343
LVGCK++GEE+LKSV+S VPA+
Sbjct: 383 LVGCKEMGEEVLKSVDSQVPAS 404
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 480,915,565
Number of Sequences: 1393205
Number of extensions: 9425553
Number of successful extensions: 24554
Number of sequences better than 10.0: 464
Number of HSP's better than 10.0 without gapping: 23897
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24521
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22283372436
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
