Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004526A_C01 KMC004526A_c01
(402 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_200064.2| SCARECROW transcriptional regulator-like; prote... 60 7e-09
pir||T51239 scarecrow-like protein 8 [imported] - Arabidopsis th... 60 7e-09
dbj|BAB10182.1| SCARECROW transcriptional regulator-like [Arabid... 60 7e-09
gb|AAO23570.1| sodium channel 7 [Sternopygus macrurus] 35 0.22
pir||F71620 hypothetical protein PFB0230c - malaria parasite (Pl... 35 0.29
>ref|NP_200064.2| SCARECROW transcriptional regulator-like; protein id: At5g52510.1,
supported by cDNA: gi_20466439 [Arabidopsis thaliana]
gi|20466440|gb|AAM20537.1| SCARECROW transcriptional
regulator-like [Arabidopsis thaliana]
gi|22136380|gb|AAM91268.1| SCARECROW transcriptional
regulator-like [Arabidopsis thaliana]
Length = 371
Score = 60.1 bits (144), Expect = 7e-09
Identities = 25/30 (83%), Positives = 28/30 (93%)
Frame = -1
Query: 366 NRVNPGLTVKEENGGICFGWMGRTLTVASA 277
NRV+PG TVKE+NGG+CFGWMGR LTVASA
Sbjct: 340 NRVHPGFTVKEDNGGVCFGWMGRALTVASA 369
>pir||T51239 scarecrow-like protein 8 [imported] - Arabidopsis thaliana
(fragment) gi|4580523|gb|AAD24408.1|AF036305_1
scarecrow-like 8 [Arabidopsis thaliana]
Length = 573
Score = 60.1 bits (144), Expect = 7e-09
Identities = 25/30 (83%), Positives = 28/30 (93%)
Frame = -1
Query: 366 NRVNPGLTVKEENGGICFGWMGRTLTVASA 277
NRV+PG TVKE+NGG+CFGWMGR LTVASA
Sbjct: 542 NRVHPGFTVKEDNGGVCFGWMGRALTVASA 571
>dbj|BAB10182.1| SCARECROW transcriptional regulator-like [Arabidopsis thaliana]
Length = 640
Score = 60.1 bits (144), Expect = 7e-09
Identities = 25/30 (83%), Positives = 28/30 (93%)
Frame = -1
Query: 366 NRVNPGLTVKEENGGICFGWMGRTLTVASA 277
NRV+PG TVKE+NGG+CFGWMGR LTVASA
Sbjct: 609 NRVHPGFTVKEDNGGVCFGWMGRALTVASA 638
>gb|AAO23570.1| sodium channel 7 [Sternopygus macrurus]
Length = 1136
Score = 35.0 bits (79), Expect = 0.22
Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 5/78 (6%)
Frame = -3
Query: 262 FFIFLIWFGVSLLLYITLLLYFNVI*R*WKRQENRFG*LYMIMRKG*RR-----RRIKSQ 98
+F+ I FG + TL L+ VI + +Q+ R G + M + ++ +++ S+
Sbjct: 1045 YFVIFIIFGS----FFTLNLFIGVIIDNFNQQKRRLGGQDIFMTEEQKKYYNAMKKLGSK 1100
Query: 97 RKRKPISLPLSHGSSFFF 44
+ +KPI PL+H FFF
Sbjct: 1101 KPQKPIPRPLNHMQGFFF 1118
>pir||F71620 hypothetical protein PFB0230c - malaria parasite (Plasmodium
falciparum)
Length = 646
Score = 34.7 bits (78), Expect = 0.29
Identities = 25/71 (35%), Positives = 37/71 (51%), Gaps = 6/71 (8%)
Frame = -2
Query: 266 FLFYFFNLVRSIIIIIYHIVTIF*RYLEIMETPRE*IWIIIYD------HEKRVKKKKNQ 105
+++Y F + S I I Y +IF +Y + +E I I+ D H KR K+K +
Sbjct: 227 YIYYIFFMFYSFIFIEYFSNSIFRKYTHHKKRYKEIIQDILNDNKLLNLHFKRYKEKYKK 286
Query: 104 IPKKKKTHLSS 72
KKKK H+SS
Sbjct: 287 -KKKKKLHISS 296
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 362,284,863
Number of Sequences: 1393205
Number of extensions: 7887557
Number of successful extensions: 36453
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 32426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36130
length of database: 448,689,247
effective HSP length: 109
effective length of database: 296,829,902
effective search space used: 7123917648
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
